Evidence map›Paper›PMID 37831104›Full record

ArticleNucleic acids research2023

Low RNA stability signifies strong expression regulatability of tumor suppressors.

Xinlei Gao, Yang Yi, Jie Lv, Yanqiang Li, Kulandaisamy Arulsamy, Sahana Suresh Babu, Ivone Bruno, Lili Zhang, Qi Cao, Kaifu Chen

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xinlei GaoBasic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston, MA 02115, USA.
Yang YiDepartment of Urology, Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.
Jie LvHouston Methodist Research Institute, The Methodist Hospital System, Houston, TX 77030, USA.
Yanqiang LiBasic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston, MA 02115, USA.ORCID 0000-0001-6846-6884
Kulandaisamy ArulsamyBasic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston, MA 02115, USA.
Sahana Suresh BabuHouston Methodist Research Institute, The Methodist Hospital System, Houston, TX 77030, USA.
Ivone BrunoHouston Methodist Research Institute, The Methodist Hospital System, Houston, TX 77030, USA.
Lili ZhangBasic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston, MA 02115, USA.
Qi CaoDepartment of Urology, Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-5140-3681
Kaifu ChenBasic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston, MA 02115, USA.ORCID 0000-0003-1009-4357

Funding

Targeting FOXA1-downstream pathways: a novel therapeutic strategy for castration-resistant prostate cancerP50CA180995 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ABDULKADIR, SARKI A., HUSSAIN, MAHA H · 2015 to 2025
$19.9M
Reversal of Heart Failure: Role of Vascular RecoveryR01HL148338 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2020 to 2023
$2.8M
A non-canonical role for EZH2 in rRNA methtlationR01CA256741 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CAO, QI · 2021 to 2025
$2.1M
The inhibitory network between EZH2 and PARP1 in triple-negative breast cancerR01CA208257 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CAO, QI · 2017 to 2022
$1.8M
Bioinformatics Techniques to Analyze Dynamic Changes of 3D GenomeR01GM138407 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI CHEN, KAIFU · 2022 to 2025
$1.8M
Role of S-nitrosylation in TransdifferentiationR01HL133254 · NHLBI · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU, COOKE, JOHN P · 2018 to 2021
$1.6M
Computational epigenetics modeling of cell identity genesR01GM125632 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI CHEN, KAIFU · 2018 to 2021
$1.4M
NCI NIH HHS P50 CA180995NCI NIH HHS R01 CA208257NCI NIH HHS R01 CA256741NHLBI NIH HHS R01 HL133254NHLBI NIH HHS R01 HL148338NIGMS NIH HHS R01 GM125632NIGMS NIH HHS R01 GM138407NIH HHS R01GM138407
6 · The paper itself

Abstract

RNA expression of a gene is determined by not only transcriptional regulation, but also post-transcriptional regulation of RNA decay. The precise regulation of RNA stability in the cell plays an important role in normal development. Dysregulation of RNA stability can lead to diseases such as cancer. Here we found tumor suppressor RNAs tended to decay fast in normal cell types when compared with other RNAs. Consistent with a negative effect of m6A modification on RNA stability, we observed preferential deposition of m6A on tumor suppressor RNAs. Moreover, abundant m6A and fast decay of tumor suppressor RNAs both tended to be further enhanced in prostate cancer cells relative to normal prostate epithelial cells. Further, knockdown of m6A methyltransferase METTL3 and reader YTHDF2 in prostate cancer cells both posed stronger effect on tumor suppressor RNAs than on other RNAs. These results indicated a strong post transcriptional expression regulatability mediated by abundant m6A modification on tumor suppressor RNAs.

Indexed as

Genes, Tumor SuppressorProstatic NeoplasmsRNA, MessengerRNA StabilityHumansMaleMethyltransferasesRNAMethyltransferasesMETTL3 protein, humanRNARNA, Messenger

Identifiers

PMID37831104
PMCPMC10681714

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.