Evidence map›Paper›PMID 37831086›Full record

ArticleNucleic acids research2023

A conserved isoleucine in the binding pocket of RIG-I controls immune tolerance to mitochondrial RNA.

Ann Kristin de Regt, Kanchan Anand, Katrin Ciupka, Felix Bender, Karl Gatterdam, Bastian Putschli, David Fusshöller, Daniel Hilbig, Alexander Kirchhoff, Charlotte Hunkler and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 2 institutions in 3 countries.

Ann Kristin de RegtDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Kanchan AnandInstitute of Structural Biology, University Hospital Bonn, Bonn, Germany.
Katrin CiupkaDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Felix BenderDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.ORCID 0009-0008-9784-6075
Karl GatterdamInstitute of Structural Biology, University Hospital Bonn, Bonn, Germany.
Bastian PutschliDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
David FusshöllerInstitute of Structural Biology, University Hospital Bonn, Bonn, Germany.
Daniel HilbigDepartment of Oncology, Hematology and Rheumatology, University Hospital Bonn, Bonn, Germany.
Alexander KirchhoffDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Charlotte HunklerDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Steven WolterDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Agathe GrünewaldDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Christina WallerathDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Christine Schuberth-WagnerDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Janos LudwigDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Katrin PaeschkeDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Eva BartokDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.ORCID 0000-0003-0556-1950
Gregor HageluekenInstitute of Structural Biology, University Hospital Bonn, Bonn, Germany.
Gunther HartmannDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Thomas ZillingerDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Matthias GeyerInstitute of Structural Biology, University Hospital Bonn, Bonn, Germany.
Martin SchleeDepartment of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.ORCID 0000-0003-3671-7639
University Hospital Bonn · DEAarhus University · DK

Funding

BONFORDeutsche Forschungsgemeinschaft EXC2151 - 390873048Johannes Gutenberg University MainzUniversity Hospital BonnUniversity of Bonn
6 · The paper itself

Abstract

RIG-I is a cytosolic receptor of viral RNA essential for the immune response to numerous RNA viruses. Accordingly, RIG-I must sensitively detect viral RNA yet tolerate abundant self-RNA species. The basic binding cleft and an aromatic amino acid of the RIG-I C-terminal domain(CTD) mediate high-affinity recognition of 5'triphosphorylated and 5'base-paired RNA(dsRNA). Here, we found that, while 5'unmodified hydroxyl(OH)-dsRNA demonstrated residual activation potential, 5'-monophosphate(5'p)-termini, present on most cellular RNAs, prevented RIG-I activation. Determination of CTD/dsRNA co-crystal structures and mutant activation studies revealed that the evolutionarily conserved I875 within the CTD sterically inhibits 5'p-dsRNA binding. RIG-I(I875A) was activated by both synthetic 5'p-dsRNA and endogenous long dsRNA within the polyA-rich fraction of total cellular RNA. RIG-I(I875A) specifically interacted with long, polyA-bearing, mitochondrial(mt) RNA, and depletion of mtRNA from total RNA abolished its activation. Altogether, our study demonstrates that avoidance of 5'p-RNA recognition is crucial to prevent mtRNA-triggered RIG-I-mediated autoinflammation.

Indexed as

DEAD Box Protein 58IsoleucineReceptors, ImmunologicHumansImmune ToleranceRNA, Double-StrandedRNA, MitochondrialRNA, ViralDEAD Box Protein 58IsoleucineReceptors, ImmunologicRIGI protein, humanRNA, Double-StrandedRNA, MitochondrialRNA, Viral

Identifiers

PMID37831086
PMCPMC10681732
OpenAlexW4387598711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.