Evidence map›Paper›PMID 37828292›Full record

ArticleCommunications chemistry2023

Experimental phasing opportunities for macromolecular crystallography at very long wavelengths.

Kamel El Omari, Ramona Duman, Vitaliy Mykhaylyk, Christian M Orr, Merlyn Latimer-Smith, Graeme Winter, Vinay Grama, Feng Qu, Kiran Bountra, Hok Sau Kwong and 22 more

Open access · goldAbstract read
In one paragraph

Article in Communications chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Crystal structure of a tRNA acceptor-stem mimic at 1.94 Å resolution.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Utilizing anomalous signals for element identification in macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2024
    Article
  8. Crystal structure of the Rib domain of the cell-wall-anchored surface protein from Limosilactobacillus reuteri.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. A database overview of metal-coordination distances in metalloproteins.Acta crystallographica. Section D, Structural biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 10 institutions in 7 countries.

Kamel El OmariDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.ORCID http://orcid.org/0000-0003-3506-6045
Ramona DumanDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.
Vitaliy MykhaylykDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.ORCID http://orcid.org/0000-0003-0106-2724
Christian M OrrDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.ORCID http://orcid.org/0000-0002-6137-8969
Merlyn Latimer-SmithDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.
Graeme WinterDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.
Vinay GramaDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.
Feng QuResearch Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK.
Kiran BountraResearch Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK.
Hok Sau KwongResearch Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK.
Maria RomanoResearch Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0001-8901-3630
Rosana I ReisNational Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK.
Lutz VogeleyCharles River Discovery Research Services UK, Chesterford Research Park, Saffron Walden, CB10 1XL, UK.
Luca VecchiaDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.ORCID http://orcid.org/0000-0003-0531-3180
C David OwenDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.
Sina WittmannDepartment of Biochemistry, University of Oxford, Oxford, UK.
Max RennerDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.
Miki SendaStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.ORCID http://orcid.org/0000-0003-3863-4503
Naohiro MatsugakiStructural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.
Yoshiaki KawanoAdvanced Photon Technology Division, RIKEN SPring-8 Center, Hyogo, 679-5148, Japan.ORCID http://orcid.org/0000-0003-3264-3783
Thomas A BowdenDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.ORCID http://orcid.org/0000-0002-8066-8785
Isabel MoraesNational Physical Laboratory, Hampton Road, Teddington, TW11 0LW, UK.ORCID http://orcid.org/0000-0002-7427-5467
Jonathan M GrimesDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.ORCID http://orcid.org/0000-0001-9698-0389
Erika J ManciniSchool of Life Sciences, University of Sussex, Falmer, Brighton, BN1 9QG, UK.
Martin A WalshDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.ORCID http://orcid.org/0000-0001-5683-1151
Cristiane R GuzzoDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-5664-8055
Raymond J OwensDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.ORCID http://orcid.org/0000-0002-3705-2993
E Yvonne JonesDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, UK.
David G BrownCharles River Discovery Research Services UK, Chesterford Research Park, Saffron Walden, CB10 1XL, UK.ORCID http://orcid.org/0000-0003-4605-4779
Dave I StuartDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK.ORCID http://orcid.org/0000-0002-3426-4210
Konstantinos BeisResearch Complex at Harwell, Rutherford Appleton Laboratory, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0001-5727-4721
Armin WagnerDiamond Light Source, Harwell Science and Innovation Campus, -, OX110DE, UK. armin.wagner@diamond.ac.uk.ORCID http://orcid.org/0000-0001-8995-7324
Rutherford Appleton Laboratory · GBCentre for Human Genetics · GBDiamond Light Source · GBCharles River Laboratories (United Kingdom) · GBHigh Energy Accelerator Research Organization · JPNational Physical Laboratory · GBSPring-8 · JPUniversidade de São Paulo · BRUniversity of Oxford · GBUniversity of Sussex · GB

Funding

Medical Research Council MR/K018779/1Medical Research Council MR/L009528/1Medical Research Council MR/N020103/1Medical Research Council MR/S007555/1Medical Research Council MR/V001329/1Wellcome Trust
6 · The paper itself

Abstract

Despite recent advances in cryo-electron microscopy and artificial intelligence-based model predictions, a significant fraction of structure determinations by macromolecular crystallography still requires experimental phasing, usually by means of single-wavelength anomalous diffraction (SAD) techniques. Most synchrotron beamlines provide highly brilliant beams of X-rays of between 0.7 and 2 Å wavelength. Use of longer wavelengths to access the absorption edges of biologically important lighter atoms such as calcium, potassium, chlorine, sulfur and phosphorus for native-SAD phasing is attractive but technically highly challenging. The long-wavelength beamline I23 at Diamond Light Source overcomes these limitations and extends the accessible wavelength range to λ = 5.9 Å. Here we report 22 macromolecular structures solved in this extended wavelength range, using anomalous scattering from a range of elements which demonstrate the routine feasibility of lighter atom phasing. We suggest that, in light of its advantages, long-wavelength crystallography is a compelling option for experimental phasing.

Identifiers

PMID37828292
PMCPMC10570326
OpenAlexW4387581489

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.