Evidence map›Paper›PMID 37828264›Full record

ArticleParasitology research2023

Microsatellite markers for Opisthorchis felineus to understand its genetic diversity and transmission patterns of opisthorchiosis.

Aleksey V Katokhin, Irina V Saltykova, Claudio De Liberato, Rolf Schuster, Thirumalaisamy P Velavan

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Article in Parasitology research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

5 authors at 5 institutions in 5 countries.

Aleksey V KatokhinInstitute of Cytology and Genetics SB RAS, Ac. Lavrent'ev Ave, 10, Novosibirsk, 630090, Russian Federation. katokhin@bionet.nsc.ru.
Irina V SaltykovaCentral Research Laboratory, Siberian State Medical University, Moskovsky Trakt, 2, Tomsk, 634050, Russian Federation.ORCID http://orcid.org/0000-0002-0457-5392
Claudio De LiberatoIstituto Zooprofilattico Sperimentale del Lazio E Della Toscana "M. Aleandri", Via Appia Nuova, 1411-00178, Rome, Italy.ORCID http://orcid.org/0000-0003-4027-1182
Rolf SchusterCentral Veterinary Research Laboratory, P.O. Box 597, Dubai, United Arab Emirates.ORCID http://orcid.org/0000-0001-7421-6777
Thirumalaisamy P VelavanInstitute of Tropical Medicine, University of Tübingen, Wilhelmstraße, 27 72074, Tübingen, Germany.ORCID http://orcid.org/0000-0002-9809-9883
Central Veterinary Research Laboratory · AEInstitute of Cytology and Genetics · RUIstituto Zooprofilattico Sperimentale delle Regioni Lazio e Toscana · ITSiberian State Medical University · RUVietnamese - German Center of Excellence in Medical Research · VN

Funding

DAAD Funding programme 50015559Federal Research Center Institute of Cytology and Genetics SB RAS FWNR-2022-0019
6 · The paper itself

Abstract

Opisthorchis felineus is a food-borne trematode which causes opisthorchiosis and affects mainly the liver and bile ducts of the liver with a possible risk of bile duct carcinogenesis resulting in cholangiocarcinoma. In Russia, O. felineus is mainly endemic in Western Siberia (Ob and Irtysh river basins) and occurs throughout the Volga, Kama, Don, and Dnepr river basins. The prevalence, intensity, and clinical significance of human infections and the incidence of cholangiocarcinoma vary geographically in endemic regions. Currently, there is substantial evidence on genetic variation of O. felineus, but information on the population genetic structure is so far very scarce. Because microsatellite DNA of this parasite is not available, we for the first time isolated sufficient microsatellite loci to examine the genetic diversity and population structure of O. felineus, using multiple nuclear loci approach. A total of ten highly polymorphic microsatellite loci from a constructed enriched genomic DNA library were characterized, using 29 samples representing huge O. felineus metapopulation extended in latitude over 5000 km from Middle Europe to Western Siberia. At least three populations can be discerned as result of analysis of the microsatellite loci genetic diversity. Based on the results for the first time, a hypothesis was put forward about the formation of a modern habitat of O. felineus.

Indexed as

Bile Duct NeoplasmsCholangiocarcinomaOpisthorchiasisOpisthorchisAnimalsBile Ducts, IntrahepaticGenetic VariationHumansMicrosatellite RepeatsMicrosatellite lociOpisthorchiosis (opisthorchiasis)Opisthorchis felineusPopulation structureTransmission dynamics

Identifiers

PMID37828264
OpenAlexW4387582586

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.