Evidence map›Paper›PMID 37828010›Full record

ArticleNature communications2023

HMGA2 directly mediates chromatin condensation in association with neuronal fate regulation.

Naohiro Kuwayama, Tomoya Kujirai, Yusuke Kishi, Rina Hirano, Kenta Echigoya, Lingyan Fang, Sugiko Watanabe, Mitsuyoshi Nakao, Yutaka Suzuki, Kei-Ichiro Ishiguro and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. MECP2Science China. Life sciences · 2026
    Article
  2. iScience · 2026
    Article
  3. Article
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  11. Review
  12. Article
  13. Article
  14. Epigenetics and the timing of neuronal differentiation.Current opinion in neurobiology · 2024
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Naohiro KuwayamaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan.
Tomoya KujiraiInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, 113-0032, Japan.
Yusuke KishiInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, 113-0032, Japan.ORCID 0000-0003-2846-5400
Rina HiranoInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, 113-0032, Japan.ORCID 0000-0001-8871-6166
Kenta EchigoyaInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, 113-0032, Japan.ORCID 0009-0008-2077-5467
Lingyan FangGraduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan.ORCID 0009-0007-7712-6460
Sugiko WatanabeInstitute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, 860-0811, Japan.
Mitsuyoshi NakaoInstitute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, 860-0811, Japan.ORCID 0000-0002-2196-8673
Yutaka SuzukiDepartment of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-8561, Japan.ORCID 0000-0003-4852-1879
Kei-Ichiro IshiguroInstitute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, 860-0811, Japan.ORCID 0000-0002-7515-1511
Hitoshi KurumizakaInstitute for Quantitative Biosciences, The University of Tokyo, Tokyo, 113-0032, Japan. kurumizaka@iqb.u-tokyo.ac.jp.ORCID 0000-0001-7412-3722
Yukiko GotohGraduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan. ygotoh@mol.f.u-tokyo.ac.jp.ORCID 0000-0001-9367-6648
The University of Tokyo · JPKumamoto University · JPQuantitative BioSciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of factors that regulate chromatin condensation is important for understanding of gene regulation. High-mobility group AT-hook (HMGA) proteins 1 and 2 are abundant nonhistone chromatin proteins that play a role in many biological processes including tissue stem-progenitor cell regulation, but the nature of their protein function remains unclear. Here we show that HMGA2 mediates direct condensation of polynucleosomes and forms droplets with nucleosomes. Consistently, most endogenous HMGA2 localized to transposase 5- and DNase I-inaccessible chromatin regions, and its binding was mostly associated with gene repression, in mouse embryonic neocortical cells. The AT-hook 1 domain was necessary for chromatin condensation by HMGA2 in vitro and in cellulo, and an HMGA2 mutant lacking this domain was defective in the ability to maintain neuronal progenitors in vivo. Intrinsically disordered regions of other proteins could substitute for the AT-hook 1 domain in promoting this biological function of HMGA2. Taken together, HMGA2 may regulate neural cell fate by its chromatin condensation activity.

Indexed as

ChromatinGene Expression RegulationAnimalsCell DifferentiationMiceNucleosomesStem CellsChromatinNucleosomes

Identifiers

PMID37828010
PMCPMC10570362
OpenAlexW4387581401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.