Evidence map›Paper›PMID 37824826›Full record

ReviewThe Plant cell2024

Complementing model species with model clades.

Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Michael S Barker, Russell L Barrett, Aleksandra Beric, Samik Bhattacharya, Sarah B Carey and 29 more

Abstract readReview
In one paragraph

Review in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. International journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Makenzie E MabryFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-6139-9559
R Shawn AbrahamsDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0003-1749-2040
Ihsan A Al-ShehbazMissouri Botanical Garden, Shaw Boulevard, St. Louis, MO 63110, USA.ORCID 0000-0003-1822-4005
William J BakerRoyal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK.ORCID 0000-0001-6727-1831
Simon BarakBen-Gurion University of the Negev, French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institutes for Desert Research, Midreshet Ben-Gurion, 8499000, Israel.ORCID 0000-0002-4238-4992
Michael S BarkerDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.ORCID 0000-0001-7173-1319
Russell L BarrettNational Herbarium of New South Wales, Australian Botanic Garden, Locked Bag 6002, Mount Annan, NSW 2567, Australia.ORCID 0000-0003-0360-8321
Aleksandra BericDepartment of Psychiatry, Washington University in Saint Louis School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-9351-585X
Samik BhattacharyaDepartment of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany.ORCID 0000-0001-6151-5217
Sarah B CareyHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.ORCID 0000-0002-6431-0660
Gavin C ConantDepartment of Biological Sciences, Bioinformatics Research Center, Program in Genetics, North Carolina State University, Raleigh, NC 27695, USA.ORCID 0000-0002-8677-4933
John G ConranACEBB and SGC, School of Biological Sciences, The University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0003-2268-2703
Maheshi DassanayakeDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.ORCID 0000-0003-3123-3731
Patrick P EdgerDepartment of Horticulture, Michigan State University, East Lansing, MI 48864, USA.ORCID 0000-0001-6836-3041
Jocelyn C HallDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.ORCID 0000-0002-5279-4346
Yue HaoCancer and Cell Biology Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA.ORCID 0000-0002-5065-8906
Kasper P HendriksDepartment of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany.ORCID 0000-0003-0245-8368
Julian M HibberdDepartment of Plant Sciences, University of Cambridge, Cambridge, CB2 1TN, UK.ORCID 0000-0003-0662-7958
Graham J KingSouthern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia.ORCID 0000-0002-5975-6051
Daniel J KliebensteinDepartment of Plant Sciences, UC Davis, Davis, CA 95616, USA.ORCID 0000-0001-5759-3175
Marcus A KochCentre for Organismal Studies (COS), Heidelberg University, 69120 Heidelberg, Germany.ORCID 0000-0002-1693-6829
Ilia J LeitchRoyal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK.ORCID 0000-0002-3837-8186
Frederic LensFunctional Traits, Naturalis Biodiversity Center, PO Box 9517, Leiden 2300 RA, the Netherlands.ORCID 0000-0002-5001-0149
Martin A LysakCEITEC, and NCBR, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0000-0003-0318-4194
Alex C McAlvayInstitute of Economic Botany, New York Botanical Garden, The Bronx, NY 10458, USA.ORCID 0000-0001-7051-2018
Michael T W McKibbenDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.ORCID 0000-0002-1342-0085
Francesco MercatiNational Research Council (CNR), Institute of Biosciences and Bioresource (IBBR), Palermo 90129, Italy.ORCID 0000-0003-1356-2881
Richard C MooreBiology Department, Miami University, Oxford, OH 45056, USA.ORCID 0000-0002-5646-1450
Klaus MummenhoffDepartment of Biology, Botany, University of Osnabrück, D-49076 Osnabrück, Germany.ORCID 0000-0002-8449-1593
Daniel J MurphyRoyal Botanic Gardens Victoria, Melbourne, VIC 3004, Australia.ORCID 0000-0002-8358-363X
Lachezar A NikolovDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.ORCID 0000-0003-1594-6416
Michael PisiasDivision of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0003-0538-9919
Eric H RoalsonSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA.ORCID 0000-0003-1655-3681
M Eric SchranzBiosystematics Group, Wageningen University, 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-6777-6565
Shawn K ThomasDivision of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.ORCID 0000-0002-6198-8847
Qingyi YuDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Hilo, HI 96720, USA.ORCID 0000-0001-5393-5764
Alan YoccaHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.ORCID 0000-0002-0974-364X
J Chris PiresDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523-1170, USA.ORCID 0000-0001-9682-2639
Alex E HarkessHudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.ORCID 0000-0002-2035-0871

Funding

National Science Foundation, USA, and The United States-Israel Binational Science Foundation 1923589/2019610The Goldinger Trust Jewish FundUS Department of Energy BER-DE-SC0020358
6 · The paper itself

Abstract

Model species continue to underpin groundbreaking plant science research. At the same time, the phylogenetic resolution of the land plant tree of life continues to improve. The intersection of these 2 research paths creates a unique opportunity to further extend the usefulness of model species across larger taxonomic groups. Here we promote the utility of the Arabidopsis thaliana model species, especially the ability to connect its genetic and functional resources, to species across the entire Brassicales order. We focus on the utility of using genomics and phylogenomics to bridge the evolution and diversification of several traits across the Brassicales to the resources in Arabidopsis, thereby extending scope from a model species by establishing a "model clade." These Brassicales-wide traits are discussed in the context of both the model species Arabidopsis and the family Brassicaceae. We promote the utility of such a "model clade" and make suggestions for building global networks to support future studies in the model order Brassicales.

Indexed as

ArabidopsisBrassicaceaePhylogenyGenome, PlantGenomics

Identifiers

PMID37824826
PMCPMC11062466

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.