Evidence map›Paper›PMID 37824655›Full record

ArticleScience (New York, N.Y.)2023

Transcriptomic cytoarchitecture reveals principles of human neocortex organization.

Nikolas L Jorstad, Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza R Barkan, Kyle J Travaglini, Darren Bertagnolli, Jazmin Campos, Tamara Casper, Kirsten Crichton and 33 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed.

  1. Article
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  5. Article
  6. Distinct single-nucleus RNA-seq changes among non-neuronal cells in ADNC, LATE-NC, and mixed pathologies.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
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  19. Article
  20. Review

86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Nikolas L JorstadAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-7906-9470
Jennie CloseAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9234-5855
Nelson JohansenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4436-969X
Anna Marie YannyAllen Institute for Brain Science, Seattle, WA 98109, USA.
Eliza R BarkanAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-7871-4327
Kyle J TravagliniAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3164-6448
Darren BertagnolliAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-6626-1567
Jazmin CamposAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-9384-9913
Tamara CasperAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-1638-3651
Kirsten CrichtonAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7869-1492
Nick DeeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-2831-9254
Song-Lin DingAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7072-5272
Emily GelfandAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-2175-5894
Jeff GoldyAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-5140-6922
Daniel HirschsteinAllen Institute for Brain Science, Seattle, WA 98109, USA.
Katelyn KiickAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-1785-8092
Matthew KrollAllen Institute for Brain Science, Seattle, WA 98109, USA.
Michael KunstAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-4159-8056
Kanan LathiaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-0080-1951
Brian LongAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-7793-5969
Naomi MartinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-0034-1628
Delissa McMillenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3413-4424
Trangthanh PhamAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4738-5062
Christine RimorinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-1491-8552
Augustin RuizAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8361-5152
Nadiya ShapovalovaAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8618-8272
Soraya ShehataAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-2909-064X
Kimberly SilettiDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 77 Stockholm, Sweden.ORCID 0000-0001-7620-8973
Saroja SomasundaramAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3729-9849
Josef SulcAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-4928-7183
Michael TieuAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9286-5623
Amy TorkelsonAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-9465-4202
Herman TungAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-0812-3318
Edward M CallawaySystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.ORCID 0000-0002-6366-5267
Patrick R HofNash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.ORCID 0000-0002-3208-1154
C Dirk KeeneDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-5291-1469
Boaz P LeviAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-8346-872X
Sten LinnarssonDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, 171 77 Stockholm, Sweden.ORCID 0000-0002-3491-3444
Partha P MitraCold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY 11724, USA.ORCID 0000-0001-8818-6804
Kimberly SmithAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-3142-1970
Rebecca D HodgeAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0002-5784-9668
Trygve E BakkenAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0003-3373-7386
Ed S LeinAllen Institute for Brain Science, Seattle, WA 98109, USA.ORCID 0000-0001-9012-6552

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
University of Washington Alzheimer's Disease Research CenterP30AG066509 · NIA · UNIVERSITY OF WASHINGTON · PI Thomas J. Grabowski · 2020 to 2026
$29.0M
A multimodal atlas of human brain cell typesU01MH114812 · NIMH · ALLEN INSTITUTE · PI LEIN, ED · 2017 to 2021
$19.2M
Imaging and Analysis Techniques to Construct a Cell Census Atlas of the Human Brain Admin SupplementU01MH117023 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI BOAS, DAVID A, FISCHL, BRUCE · 2018 to 2022
$7.6M
NIMH NIH HHS U01 MH114812NIMH NIH HHS U01 MH117023NIMH NIH HHS U19 MH114830
6 · The paper itself

Abstract

Variation in cytoarchitecture is the basis for the histological definition of cortical areas. We used single cell transcriptomics and performed cellular characterization of the human cortex to better understand cortical areal specialization. Single-nucleus RNA-sequencing of 8 areas spanning cortical structural variation showed a highly consistent cellular makeup for 24 cell subclasses. However, proportions of excitatory neuron subclasses varied substantially, likely reflecting differences in connectivity across primary sensorimotor and association cortices. Laminar organization of astrocytes and oligodendrocytes also differed across areas. Primary visual cortex showed characteristic organization with major changes in the excitatory to inhibitory neuron ratio, expansion of layer 4 excitatory neurons, and specialized inhibitory neurons. These results lay the groundwork for a refined cellular and molecular characterization of human cortical cytoarchitecture and areal specialization.

Indexed as

NeocortexHumansNeuronsPhylogenySingle-Cell Gene Expression AnalysisTranscriptome

Identifiers

PMID37824655
PMCPMC11687949

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.