Evidence map›Paper›PMID 37824647›Full record

ArticleScience (New York, N.Y.)2023

Single-cell analysis of prenatal and postnatal human cortical development.

Dmitry Velmeshev, Yonatan Perez, Zihan Yan, Jonathan E Valencia, David R Castaneda-Castellanos, Li Wang, Lucas Schirmer, Simone Mayer, Brittney Wick, Shaohui Wang and 4 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
25.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 166 citations in OpenAlex.

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  7. Genes · 2026
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71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Dmitry Velmeshev *Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0002-6491-7307
Yonatan Perez *Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0001-9791-1617
Zihan YanDepartment of Neurobiology, Duke University School of Medicine, Durham, NC 27710, USA.
Jonathan E ValenciaCurio Bioscience, Palo Alto, CA 94303, USA.ORCID 0000-0002-3498-8980
David R Castaneda-CastellanosVizgen Inc., Cambridge, MA 02138, USA.
Li WangEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0001-9510-6294
Lucas SchirmerDivision of Neuroimmunology, Department of Neurology, Medical Faculty Mannheim, Heidelberg University, 68167 Mannheim, Germany.ORCID 0000-0001-7142-4116
Simone MayerEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0002-6381-2474
Brittney WickUC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA 95060, USA.
Shaohui WangEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.
Tomasz Jan NowakowskiDepartment of Neurological Surgery, University of California, San Francisco, CA 94143, USA.ORCID 0000-0003-2345-4964
Mercedes ParedesDepartment of Neurology, University of California, San Francisco, CA 94143, USA.ORCID 0000-0003-2503-1447
Eric J HuangEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0002-5381-3801
Arnold R KriegsteinEli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.ORCID 0000-0001-5742-2990
University of California, San Francisco · USDuke University · USBiogen (United States) · USBioscience Research · USHeidelberg University · DEUniversity of California, Santa Cruz · US

Funding

The UCSC Genome BrowserU24HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Maximilian Haeussler · 2022 to 2026
$17.6M
Regulation of Cellular Pathwaysin Human Brain DevelopmentP01NS083513 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PIAO, XIANHUA · 2014 to 2024
$12.6M
Development and Expansion of the Human Cerebral CortexR35NS097305 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRIEGSTEIN, ARNOLD · 2017 to 2024
$8.5M
A Cellular Resolution Census of the Developing Human BrainU01MH114825 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, ERIC J, KRIEGSTEIN, ARNOLD · 2017 to 2021
$6.7M
A visualization interface for BRAIN single cell data, integrating transcriptomics, epigenomics and spatial assaysRF1MH132662 · NIMH · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAEUSSLER, MAXIMILIAN · 2023 to 2023
$866k
Identifying mechanisms ofsynapse maturation at neuronal subtype resolutionK99MH131832 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WANG, LI · 2023 to 2024
$182k
NHGRI NIH HHS U24 HG002371NIMH NIH HHS K99 MH131832NIMH NIH HHS RF1 MH132662NIMH NIH HHS U01 MH114825NINDS NIH HHS P01 NS083513NINDS NIH HHS R35 NS097305
6 · The paper itself

Abstract

We analyzed >700,000 single-nucleus RNA sequencing profiles from 106 donors during prenatal and postnatal developmental stages and identified lineage-specific programs that underlie the development of specific subtypes of excitatory cortical neurons, interneurons, glial cell types, and brain vasculature. By leveraging single-nucleus chromatin accessibility data, we delineated enhancer gene regulatory networks and transcription factors that control commitment of specific cortical lineages. By intersecting our results with genetic risk factors for human brain diseases, we identified the cortical cell types and lineages most vulnerable to genetic insults of different brain disorders, especially autism. We find that lineage-specific gene expression programs up-regulated in female cells are especially enriched for the genetic risk factors of autism. Our study captures the molecular progression of cortical lineages across human development.

Indexed as

Brain DiseasesCerebral CortexNeuronsFemaleGene Regulatory NetworksHumansInfant, NewbornInterneuronsMalePregnancyRisk FactorsSingle-Cell Analysis

Identifiers

PMID37824647
PMCPMC11005279
OpenAlexW4387595265

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.