Evidence map›Paper›PMID 37824174›Full record

ArticleJournal of economic entomology2023

Evaluation of identification methods for cryptic Bactrocera dorsalis (Diptera: Tephritidae) specimens: combining morphological and molecular techniques.

Emeline Charbonnel, Marie-Pierre Chapuis, Andrea Taddei, Mark K Schutze, Melissa L Starkie, Laure Benoit, Raphaëlle Mouttet, David Ouvrard

Open access · hybridAbstract read
In one paragraph

Article in Journal of economic entomology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Emeline CharbonnelCBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France.ORCID 0000-0002-8561-7610
Marie-Pierre ChapuisCBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France.ORCID 0000-0003-4405-7722
Andrea TaddeiANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France.ORCID 0000-0002-5260-5920
Mark K SchutzeQueensland Department of Agriculture and Fisheries, Brisbane, QLD, Australia.ORCID 0000-0002-0442-1844
Melissa L StarkieQueensland Department of Agriculture and Fisheries, Brisbane, QLD, Australia.ORCID 0000-0002-4240-0032
Laure BenoitCBGP, CIRAD, INRAE, Institut Agro, IRD, Univ Montpellier, Montpellier, France.ORCID 0000-0003-3740-5346
Raphaëlle MouttetANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France.ORCID 0000-0003-4676-3364
David OuvrardANSES, Plant Health Laboratory, Entomology and Botany Unit, Montferrier-sur-Lez, France.ORCID 0000-0003-2931-6116
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRDépartement Santé des Plantes et Environnement · FRCentre de Biologie pour la Gestion des Populations · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The potential for population genomics to elucidate invasion pathways of a species is limited by taxonomic identification issues. The Oriental fruit fly pest, Bactrocera dorsalis (Hendel) belongs to a complex in which several sympatric species are attracted to the same lure used in trapping and are morphologically cryptic and/or reported to hybridize. In this study, we evaluated the taxonomic ambiguity between B. dorsalis and 2 major cryptic species, based on morphological expertise and 289 target specimens sampled across the whole distribution range. Specimens were then subjected to DNA sequence analyses of the COI mitochondrial barcode and the EIF3L nuclear marker to evaluate the potential for molecular identification, in particular for specimens for which morphological identification was inconclusive. To this aim, we produced reference datasets with DNA sequences from target specimens whose morphological identification was unambiguous, which we complemented with 56 new DNA sequences from closest relatives and 76 published and curated DNA sequences of different species in the complex. After the necessary morphological observation, about 3.5% of the target dataset and 47.6% of the specimens from Southeast Asian islands displayed ambiguous character states shared with B. carambolae and/or B. occipitalis. Critical interpretation of DNA sequence data solved morphological ambiguities only when combining both mitochondrial and nuclear markers. COI discriminated B. dorsalis from 5 species; EIF3L and ITS from another species. We recommend this procedure to ensure correct identification of B. dorsalis specimens in population genetics studies and surveillance programs.

Indexed as

TephritidaeAnimalsMitochondriaSequence Analysis, DNAambiguous identificationhaplotype diversitymtDNAnDNA

Identifiers

PMID37824174
PMCPMC10711562
OpenAlexW4387562939

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.