Evidence map›Paper›PMID 37823369›Full record

ArticleeLife2023

Theoretical analysis reveals a role for RAF conformational autoinhibition in paradoxical activation.

Gaurav Mendiratta, Edward Stites

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Gaurav MendirattaIntegrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, United States.ORCID 0000-0001-5091-348X
Edward StitesDepartment of Laboratory Medicine, Yale University, New Haven, United States.ORCID 0000-0002-3783-7336
Salk Institute for Biological Studies · USYale Cancer Center · US

Funding

Systems Approaches for Opening Therapeutic WindowsDP2AT011327 · NCCIH · YALE UNIVERSITY · PI STITES, EDWARD C. · 2020 to 2020
$2.6M
Systems Biology of RAS and RAF Oncogenes and Personalized MedicineK22CA216318 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI STITES, EDWARD C. · 2017 to 2019
$583k
NCCIH NIH HHS DP2 AT011327NCI NIH HHS K22 CA216318NIH HHS DP2AT011327NIH HHS K22CA216318
6 · The paper itself

Abstract

RAF kinase inhibitors can, under certain conditions, increase RAF kinase signaling. This process, which is commonly referred to as 'paradoxical activation' (PA), is incompletely understood. We use mathematical and computational modeling to investigate PA and derive rigorous analytical expressions that illuminate the underlying mechanism of this complex phenomenon. We find that conformational autoinhibition modulation by a RAF inhibitor could be sufficient to create PA. We find that experimental RAF inhibitor drug dose-response data that characterize PA across different types of RAF inhibitors are best explained by a model that includes RAF inhibitor modulation of three properties: conformational autoinhibition, dimer affinity, and drug binding within the dimer (i.e., negative cooperativity). Overall, this work establishes conformational autoinhibition as a robust mechanism for RAF inhibitor-driven PA based solely on equilibrium dynamics of canonical interactions that comprise RAF signaling and inhibition.

Indexed as

raf KinasesSignal TransductionMolecular ConformationProtein Kinase InhibitorsProto-Oncogene Proteins B-rafProtein Kinase InhibitorsProto-Oncogene Proteins B-rafraf Kinasesbiochemistrychemical biologycomputationalcomputational biologydimerizationhumanprotein kinasesystems biologysystems modelingsystems pharmacology

Identifiers

PMID37823369
PMCPMC10627510
OpenAlexW4387563348

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.