Evidence map›Paper›PMID 37821819›Full record

ArticleBMC genomics2023

In silico and computational analysis of zinc finger motif-associated homeodomain (ZF-HD) family genes in chilli (Capsicum annuum L).

Md Abir Ul Islam, Juthy Abedin Nupur, Muhammad Shafiq, Qurban Ali, Adnan Sami, Muhammad Adnan Shahid

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026
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  10. Zinc Finger-Homeodomain Transcriptional Factors (ZHDs) in Cucumber (International journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Genome wide identification of theFrontiers in microbiology · 2024
    Article
  14. Genome-wide analysis ofFrontiers in plant science · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Md Abir Ul IslamUnited Graduate School of Agricultural Science, Faculty of Biological Sciences, Gifu University, Yanagido, Gifu, 501-1193, Japan.
Juthy Abedin NupurDepartment of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, T6G 2R3, Canada.
Muhammad ShafiqDepartment of Horticulture, University of Panjab, Lahore, 54000, Pakistan. shafiq.iags@pu.edu.pk.
Qurban AliDepartment of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, P.O BOX. 54590, Lahore, Pakistan. saim1692@gmail.com.
Adnan SamiDepartment of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, P.O BOX. 54590, Lahore, Pakistan.
Muhammad Adnan ShahidHorticultural Science Department, North Florida Research and Education Center, University of Florida/IFAS, Quincy, FL, USA.
University of the Punjab · PKGifu University · JPUniversity of Alberta · CAUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zinc finger-homeodomain (ZHD) proteins are mostly expressed in plants and are involved in proper growth and development and minimizing biotic and abiotic stress. A recent study identified and characterized the ZHD gene family in chilli (Capsicum annuum L.) to determine their probable molecular function. ZHD genes with various physicochemical characteristics were discovered on twelve chromosomes in chilli. We separated ZHD proteins into two major groups using sequence alignment and phylogenetic analysis. These groups differ in gene structure, motif distribution, and a conserved ZHD and micro-zinc finger ZF domain. The majority of the CaZHDs genes are preserved, early duplication occurred recently, and significant pure selection took place throughout evolution, according to evolutionary study. According to expression profiling, the genes were found to be equally expressed in tissues above the ground, contribute to plant growth and development and provide tolerance to biotic and abiotic stress. This in silico analysis, taken as a whole, hypothesized that these genes perform distinct roles in molecular and phytohormone signaling processes, which may serve as a foundation for subsequent research into the roles of these genes in other crops.

Indexed as

CapsicumDNA-Binding ProteinsGene Expression Regulation, PlantGenes, HomeoboxPhylogenyPlant ProteinsStress, PhysiologicalZinc FingersDNA-Binding ProteinsPlant ProteinsCapsicum annuumIn silico analysisTranscription factorZinc Finger-HD (ZHD)

Identifiers

PMID37821819
PMCPMC10566081
OpenAlexW4387531768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.