Evidence map›Paper›PMID 37821454›Full record

ArticleNature communications2023

Structure-guided inhibition of the cancer DNA-mutating enzyme APOBEC3A.

Stefan Harjes, Harikrishnan M Kurup, Amanda E Rieffer, Maitsetseg Bayarjargal, Jana Filitcheva, Yongdong Su, Tracy K Hale, Vyacheslav V Filichev, Elena Harjes, Reuben S Harris and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  3. HAMMER: Hairpin-based APOBEC3A-mediated mRNA editing reporter.bioRxiv : the preprint server for biology · 2026
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  15. Development of Allosteric Small Molecule APOBEC3B Inhibitors frombioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Stefan HarjesSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.
Harikrishnan M KurupSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0001-5517-9907
Amanda E RiefferDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota-Twin Cities, Minneapolis, MN, USA.
Maitsetseg BayarjargalSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0001-9235-9149
Jana FilitchevaSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.
Yongdong SuSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0002-2092-8872
Tracy K HaleSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.ORCID http://orcid.org/0000-0002-9483-4588
Vyacheslav V FilichevSchool of Natural Sciences, Massey University, Palmerston North, New Zealand. v.filichev@massey.ac.nz.ORCID http://orcid.org/0000-0002-7383-3025
Elena HarjesSchool of Natural Sciences, Massey University, Palmerston North, New Zealand. e.harjes@massey.ac.nz.ORCID http://orcid.org/0000-0002-3643-9432
Reuben S HarrisDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio, San Antonio, TX, USA. rsh@uthscsa.edu.ORCID http://orcid.org/0000-0002-9034-9112
Geoffrey B JamesonSchool of Natural Sciences, Massey University, Palmerston North, New Zealand. g.b.jameson@massey.ac.nz.ORCID http://orcid.org/0000-0003-4839-0784
Massey University · NZUniversity of Auckland · NZEmory University · USHoward Hughes Medical Institute · USUniversity of Minnesota · USUniversity of Washington · US

Funding

PROJECT 3 – BIOLOGY OF DNA DEAMINASES IN CANCERP01CA234228 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Reuben S Harris · 2019 to 2026
$14.5M
Howard Hughes Medical InstituteNCI NIH HHS P01 CA234228
6 · The paper itself

Abstract

The normally antiviral enzyme APOBEC3A is an endogenous mutagen in human cancer. Its single-stranded DNA C-to-U editing activity results in multiple mutagenic outcomes including signature single-base substitution mutations (isolated and clustered), DNA breakage, and larger-scale chromosomal aberrations. APOBEC3A inhibitors may therefore comprise a unique class of anti-cancer agents that work by blocking mutagenesis, slowing tumor evolvability, and preventing detrimental outcomes such as drug resistance and metastasis. Here we reveal the structural basis of competitive inhibition of wildtype APOBEC3A by hairpin DNA bearing 2'-deoxy-5-fluorozebularine in place of the cytidine in the TC substrate motif that is part of a 3-nucleotide loop. In addition, the structural basis of APOBEC3A's preference for YTCD motifs (Y = T, C; D = A, G, T) is explained. The nuclease-resistant phosphorothioated derivatives of these inhibitors have nanomolar potency in vitro and block APOBEC3A activity in human cells. These inhibitors may be useful probes for studying APOBEC3A activity in cellular systems and leading toward, potentially as conjuvants, next-generation, combinatorial anti-mutator and anti-cancer therapies.

Indexed as

NeoplasmsProteinsCytidine DeaminaseDNAHumansMutagenesisAPOBEC3A protein, humanCytidine DeaminaseDNAProteins

Identifiers

PMID37821454
PMCPMC10567711
OpenAlexW4387517410

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.