Evidence map›Paper›PMID 37821107›Full record

ArticleGenes & development2023

Allelic chromatin structure precedes imprinted expression of

Daniel Loftus, Bongmin Bae, Courtney M Whilden, Amanda J Whipple

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  7. Review
  8. Review
  9. Folding makes an imprint.Genes & development · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Daniel LoftusDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Bongmin BaeDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Courtney M WhildenDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Amanda J WhippleDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138, USA amanda_whipple@fas.harvard.edu.ORCID 0000-0002-7000-2453
Harvard University · US

Funding

Investigating molecular mechanisms and cellular functions of genomic imprintingR35GM146921 · NIGMS · HARVARD UNIVERSITY · PI Amanda Joy Whipple · 2022 to 2026
$2.0M
NIGMS NIH HHS R35 GM146921
6 · The paper itself

Abstract

Differences in chromatin state inherited from the parental gametes influence the regulation of maternal and paternal alleles in offspring. This phenomenon, known as genomic imprinting, results in genes preferentially transcribed from one parental allele. While local epigenetic factors such as DNA methylation are known to be important for the establishment of imprinted gene expression, less is known about the mechanisms by which differentially methylated regions (DMRs) lead to differences in allelic expression across broad stretches of chromatin. Allele-specific higher-order chromatin structure has been observed at multiple imprinted loci, consistent with the observation of allelic binding of the chromatin-organizing factor CTCF at multiple DMRs. However, whether allelic chromatin structure impacts allelic gene expression is not known for most imprinted loci. Here we characterize the mechanisms underlying brain-specific imprinted expression of the

Indexed as

DNA MethylationGenomic ImprintingAllelesAnimalsChromatinMiceNeurogenesisChromatinchromatin structureepigeneticsgenomic imprintingneuron differentiation

Identifiers

PMID37821107
PMCPMC10620047
OpenAlexW4387540777

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.