Evidence map›Paper›PMID 37817495›Full record

ArticleThe plant pathology journal2023

Molecular Marker Development for the Rapid Differentiation of Black Rot Causing Xanthomonas campestris pv. campestris Race 7.

Yeo-Hyeon Kim, Sopheap Mao, Nihar Sahu, Uzzal Somaddar, Hoy-Taek Kim, Masao Watanabe, Jong-In Park

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Pathogens (Basel, Switzerland) · 2026
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Yeo-Hyeon KimDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Sopheap MaoDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Nihar SahuDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Uzzal SomaddarDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Hoy-Taek KimDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Masao WatanabeGraduate School of Life Science, Tohoku University, Sendai 980-8577, Japan.
Jong-In ParkDepartment of Horticulture, Sunchon National University, Suncheon 57922, Korea.
Sunchon National University · KR

Funding

Ministry of Agriculture, Food and Rural Affairs (322059-03-2-HD050
6 · The paper itself

Abstract

Xanthomonas campestris pv. campestris (Xcc) is a plant pathogen of Brassica crops that causes black rot disease throughout the world. At present, 11 physiological races of Xcc (races 1-11) have been reported. The conventional method of using differential cultivars for Xcc race detection is not accurate and it is laborious and time-consuming. Therefore, the development of specific molecular markers has been used as a substitute tool because it offers an accurate and reliable result, particularly a quick diagnosis of Xcc races. Previously, our laboratory has successfully developed race-specific molecular markers for Xcc races 1-6. In this study, specific molecular markers to identify Xcc race 7 have been developed. In the course of study, whole genome sequences of several Xcc races, X. campestris pv. incanae, X. campestris pv. raphani, and X. campestris pv. vesicatoria were aligned to identify variable regions like sequence-characterized amplified regions and insertions and deletions specific to race 7. Primer pairs were designed targeting these regions and validated against 22 samples. The polymerase chain reaction analysis revealed that three primer pairs specifically amplified the DNA fragment corresponding to race 7. The obtained finding clearly demonstrates the efficiency of the newly developed markers in accurately detecting Xcc race 7 among the other races. These results indicated that the newly developed marker can successfully and rapidly detect Xcc race 7 from other races. This study represents the first report on the successful development of specific molecular markers for Xcc race 7.

Indexed as

black rotBrassicaceaemarkerPCRXanthomonas campestris pv. campestris

Identifiers

PMID37817495
PMCPMC10580059
OpenAlexW4387073126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.