Evidence map›Paper›PMID 37814677›Full record

ArticleBioinformation2023

Repurposing of known drugs for COVID-19 using molecular docking and simulation analysis.

Piyush Bhanu, Anagha S Setlur, Chandrashekar K, Vidya Niranjan, Nisha Hemandhar Kumar, Sakshi Buchke, Jitendra Kumar, Anita Rani, Sushil M Tiwari, Vachaspati Mishra

Abstract read
In one paragraph

Article in Bioinformation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Piyush BhanuXome Life Sciences, Bangalore Bio Innovation Centre (BBC), Helix Biotech Park, Bengaluru, Karnataka- 560100, India.
Anagha S SetlurDepartment of Biotechnology, RV College of Engineering, RV Vidyanikethan Post, Mysuru Road, Bengaluru 560059, India.
Chandrashekar KDepartment of Biotechnology, RV College of Engineering, RV Vidyanikethan Post, Mysuru Road, Bengaluru 560059, India.
Vidya NiranjanDepartment of Biotechnology, RV College of Engineering, RV Vidyanikethan Post, Mysuru Road, Bengaluru 560059, India.
Nisha Hemandhar KumarInstitute of Neuro and Sensory Physiology, University Medical Centre, Goettiengen - 37075, Germany.
Sakshi BuchkeXome Life Sciences, Bangalore Bio Innovation Centre (BBC), Helix Biotech Park, Bengaluru, Karnataka- 560100, India.
Jitendra KumarBangalore Bio Innovation Centre (BBC), Helix Biotech Park, Electronics City Phase- 1, Bengaluru-560100, Karnataka, India.
Anita RaniDepartment of Botany, Dyal Singh College, University of Delhi, New Delhi 110003, India.
Sushil M TiwariDepartment of Botany, Hansraj College, University of Delhi, Delhi 110007, India.
Vachaspati MishraDepartment of Botany, Deen Dayal Upadhyay College, University of Delhi, Delhi 110078, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We selected fifty one drugs already known for their potential disease treatment roles in various studies and subjected to docking and molecular docking simulation (MDS) analyses. Five of them showed promising features that are discussed and suggested as potential candidates for repurposing for COVID-19. These top five compounds were boswellic acid, pimecrolimus, GYY-4137, BMS-345541 and triamcinolone hexacetonide that interacted with the chosen receptors 1R42, 4G3D, 6VW1, 6VXX and 7MEQ, respectively with binding energies of -9.2 kcal/mol, -9.1 kcal/mol, -10.3 kcal/mol, -10.1 kcal/mol and -8.7 kcal/mol, respectively. The MDS studies for the top 5 best complexes revealed binding features for the chosen receptor, human NF-kappa B transcription factor as an important drug target in COVID-19-based drug development strategies.

Indexed as

COVID-19ligandmolecular dynamics simulationreceptorSARS-CoV-2

Identifiers

PMID37814677
PMCPMC10560309

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.