Evidence map›Paper›PMID 37812641›Full record

ArticlePLoS genetics2023

The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation.

Chien-Hui Ma, Deepanshu Kumar, Makkuni Jayaram, Santanu K Ghosh, Vishwanath R Iyer

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Chien-Hui MaDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0001-8753-8556
Deepanshu KumarDepartment of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, India.ORCID 0000-0002-5154-9031
Makkuni JayaramDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0001-9640-6264
Santanu K GhoshDepartment of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, India.ORCID 0000-0002-3190-8084
Vishwanath R IyerDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0003-3383-248X
Indian Institute of Technology Bombay · INThe University of Texas at Austin · USLivestrong Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extra-chromosomal selfish DNA elements can evade the risk of being lost at every generation by behaving as chromosome appendages, thereby ensuring high fidelity segregation and stable persistence in host cell populations. The yeast 2-micron plasmid and episomes of the mammalian gammaherpes and papilloma viruses that tether to chromosomes and segregate by hitchhiking on them exemplify this strategy. We document for the first time the utilization of a SWI/SNF-type chromatin remodeling complex as a conduit for chromosome association by a selfish element. One principal mechanism for chromosome tethering by the 2-micron plasmid is the bridging interaction of the plasmid partitioning proteins (Rep1 and Rep2) with the yeast RSC2 complex and the plasmid partitioning locus STB. We substantiate this model by multiple lines of evidence derived from genomics, cell biology and interaction analyses. We describe a Rep-STB bypass system in which a plasmid engineered to non-covalently associate with the RSC complex mimics segregation by chromosome hitchhiking. Given the ubiquitous prevalence of SWI/SNF family chromatin remodeling complexes among eukaryotes, it is likely that the 2-micron plasmid paradigm or analogous ones will be encountered among other eukaryotic selfish elements.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAnimalsChromatinChromatin Assembly and DisassemblyChromosomesMammalsPlasmidsChromatinSaccharomyces cerevisiae Proteins

Identifiers

PMID37812641
PMCPMC10586699
OpenAlexW4387450353

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.