Evidence map›Paper›PMID 37810271›Full record

ArticleBiomedical optics express2023

Studying fluctuating trajectories of optically confined passive tracers inside cells provides familiar active forces.

Urvashi Nakul, Srestha Roy, Gokul Nalupurackal, Snigdhadev Chakraborty, Priyanka Siwach, Jayesh Goswami, Privita Edwina, Saumendra Kumar Bajpai, Rajesh Singh, Basudev Roy

Open access · goldAbstract read
In one paragraph

Article in Biomedical optics express, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Urvashi Nakul *Department of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Srestha Roy *Department of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Gokul NalupurackalDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Snigdhadev ChakrabortyDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Priyanka SiwachDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Jayesh GoswamiDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Privita EdwinaDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.
Saumendra Kumar BajpaiDepartment of Applied Mechanics, IIT Madras, Chennai 600036, India.
Rajesh SinghDepartment of Physics, IIT Madras, Chennai 600036, India.
Basudev RoyDepartment of Physics, Quantum Centre of Excellence for Diamond and Emergent Materials (QuCenDiEM), IIT Madras, Chennai 600036, India.ORCID https://orcid.org/0000-0003-0737-2889
Indian Institute of Technology Madras · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/20/1/504900Wellcome Trust
6 · The paper itself

Abstract

In recent years, there has been a growing interest in studying the trajectories of microparticles inside living cells. Among other things, such studies are useful in understanding the spatio-temporal properties of a cell. In this work, we study the stochastic trajectories of a passive microparticle inside a cell using experiments and theory. Our theory is based on modeling the microparticle inside a cell as an active particle in a viscoelastic medium. The activity is included in our model from an additional stochastic term with non-zero persistence in the Langevin equation describing the dynamics of the microparticle. Using this model, we are able to predict the power spectral density (PSD) measured in the experiment and compute active forces. This caters to the situation where a tracer particle is optically confined and then yields a PSD for positional fluctuations. The low frequency part of the PSD yields information about the active forces that the particle feels. The fit to the model extracts such active force. Thus, we can conclude that trapping the particle does not affect the values of the forces extracted from the active fits if accounted for appropriately by proper theoretical models. In addition, the fit also provides system properties and optical tweezers trap stiffness.

Identifiers

PMID37810271
PMCPMC7615170
OpenAlexW4386601130

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.