Evidence map›Paper›PMID 37810173›Full record

ArticleFASEB bioAdvances2023

Profiling mitochondrial DNA mutations in tumors and circulating extracellular vesicles of triple-negative breast cancer patients for potential biomarker development.

Kunwar Somesh Vikramdeo, Shashi Anand, Sarabjeet Kour Sudan, Paramahansa Pramanik, Seema Singh, Andrew K Godwin, Ajay Pratap Singh, Santanu Dasgupta

Open access · goldAbstract read
In one paragraph

Article in FASEB bioAdvances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

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  13. The Genomic and Biologic Landscapes of Breast Cancer and Racial Differences.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kunwar Somesh VikramdeoMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-6016-2672
Shashi AnandMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-9615-3452
Sarabjeet Kour SudanMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-2172-1996
Paramahansa PramanikDepartment of Mathematics and Statistics University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-7070-5538
Seema SinghMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-7188-3803
Andrew K GodwinDepartment of Pathology and Laboratory Medicine University of Kansas Medical Center Kansas City Kansas USA.ORCID https://orcid.org/0000-0002-3987-9580
Ajay Pratap SinghMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0003-3492-6330
Santanu DasguptaMitchell Cancer Institute, University of South Alabama Mobile Alabama USA.ORCID https://orcid.org/0000-0002-1499-0039
USA Mitchell Cancer Institute · USThe University of Kansas Cancer Center · USUniversity of South Alabama · US

Funding

Using Integrated Omics to Identify Dysfunctional Genetic Mechanisms Influencing Schizophrenia and Sleep DisturbancesP20GM130423 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ANDREW K. GODWIN · 2019 to 2026
$21.5M
NIGMS NIH HHS P20 GM130423
6 · The paper itself

Abstract

Early detection and recurrence prediction are challenging in triple-negative breast cancer (TNBC) patients. We aimed to develop mitochondrial DNA (mtDNA)-based liquid biomarkers to improve TNBC management. Mitochondrial genome (MG) enrichment and next-generation sequencing mapped the entire MG in 73 samples (64 tissues and 9 extracellular vesicles [EV] samples) from 32 metastatic TNBCs. We measured mtDNA and cardiolipin (CL) contents, NDUFB8, and SDHB protein expression in tumors and in corresponding circulating EVs. We identified 168 nonsynonymous mtDNA mutations, with 73% (123/186) coding and 27% (45/168) noncoding in nature. Twenty percent of mutations were nucleotide transversions. Respiratory complex I (RCI) was the key target, which harbored 44% (74/168) of the overall mtDNA mutations. A panel of 11 hotspot mtDNA mutations was identified among 19%-38% TNBCs, which were detectable in the serum-derived EVs with 82% specificity. Overall, 38% of the metastatic tumor-signature mtDNA mutations were traceable in the EVs. An appreciable number of mtDNA mutations were homoplasmic (18%, 31/168), novel (14%, 23/168), and potentially pathogenic (9%, 15/168). The overall and RCI-specific mtDNA mutational load was higher in women with African compared to European ancestry accompanied by an exclusive abundance of respiratory complex (RC) protein NDUFB8 (RCI) and SDHB (RCII) therein. Increased mtDNA (

Indexed as

extracellular vesiclesliquid biomarkermitochondrial DNAmutationtriple‐negative breast cancer

Identifiers

PMID37810173
PMCPMC10551276
OpenAlexW4386543339

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.