Evidence map›Paper›PMID 37809090›Full record

ArticleFrontiers in immunology2023

OCLN as a novel biomarker for prognosis and immune infiltrates in kidney renal clear cell carcinoma: an integrative computational and experimental characterization.

Zongming Jia, Ying Kong, Chengyu Wang, Zhenyu Fu, Zhen Tian, Yizhang Sun, Yuxin Lin, Yuhua Huang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zongming JiaDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Ying KongDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Chengyu WangDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Zhenyu FuDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Zhen TianDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Yizhang SunDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Yuxin LinDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
Yuhua HuangDepartment of Urology, The First Affiliated Hospital of Soochow University, Suzhou, China.
First Affiliated Hospital of Soochow University · CNSoochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Occludin (OCLN) is an important tight junction protein and has been reported to be abnormally expressed in the development of malignant tumors. However, its biomarker and carcinogenic roles in kidney renal clear cell carcinoma (KIRC) are less investigated. Methods: The Cancer Genome Atlas database and Human Protein Atlas database were used to analyze the expression of OCLN in KIRC. UALCAN database and methylation-specific PCR assay were used to evaluate the methylation level of OCLN in KIRC. Univariate and multivariate Cox regression analyses were performed to model the prognostic significance of OCLN in KIRC patient cohorts. The correlation between OCLN expression and the immune cell infiltration, immune-related function and immune checkpoints were explored. Finally, EdU, scratch assay and transwell experiments were conducted to validate the role of OCLN in KIRC development. Results: The expression of OCLN was significantly downregulated in KIRC, compared with normal renal tissues (p<0.001). Patients with low OCLN expression showed a worse prognosis and poorer clinicopathological characteristics. Functional enrichment analysis revealed that OCLN was mainly involved in biological processes such as immune response, immunoglobulin complex circulating and cytokine and chemokine receptor to mediate KIRC development. Immune-related analysis indicated that OCLN could potentially serve as a candidate target for KIRC immunotherapy. OCLN overexpression inhibited proliferation, migration and invasion of KIRC cells Conclusion: OCLN was validated as a candidate prognostic biomarker and therapeutic target of KIRC based both on computational and experimental approaches. More

Indexed as

Carcinoma, Renal CellKidney NeoplasmsBiomarkersCarcinogenesisDatabases, ProteinHumansKidneyOccludinPrognosisBiomarkersOccludinOCLN protein, humanimmune infiltrationOCLNprognostic biomarkerrenal clear cell carcinomatranslational informatics

Identifiers

PMID37809090
PMCPMC10556524
OpenAlexW4386960772

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.