Evidence map›Paper›PMID 37807423›Full record

ArticleProtein science : a publication of the Protein Society2023

Engineering minimal tissue inhibitors of metalloproteinase targeting MMPs via gene shuffling and yeast surface display.

Arman Hosseini, Sachin Kumar, Kyle Hedin, Maryam Raeeszadeh-Sarmazdeh

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Arman HosseiniDepartment of Chemical and Materials Engineering, University of Nevada, Reno, NV, USA.ORCID 0000-0002-7198-8402
Sachin KumarDepartment of Chemical and Materials Engineering, University of Nevada, Reno, NV, USA.
Kyle HedinDepartment of Chemical and Materials Engineering, University of Nevada, Reno, NV, USA.
Maryam Raeeszadeh-SarmazdehDepartment of Chemical and Materials Engineering, University of Nevada, Reno, NV, USA.ORCID 0000-0003-2946-5584
University of Nevada, Reno · US

Funding

Selective targeting of matrix metalloproteinases for developing preterm labor therapeuticsR21HD109743 · NICHD · UNIVERSITY OF NEVADA RENO · PI RAEESZADEH SARMAZDEH, MARYAM · 2022 to 2024
$399k
Directed evolution of tissue inhibitor of metalloproteinase 3 (TIMP-3) to develop novel Alzheimer’s disease (AD) therapeuticsR03AG070511 · NIA · UNIVERSITY OF NEVADA RENO · PI RAEESZADEH SARMAZDEH, MARYAM · 2022 to 2022
$300k
NIA NIH HHS R03 AG070511NIA NIH HHS R03-AG070511NICHD NIH HHS R21 HD109743
6 · The paper itself

Abstract

Overexpression of specific matrix metalloproteinases (MMPs) has a key role in development of several diseases, such as cancer, neurological disorders, and cardiovascular diseases due to their critical role in degradation and remodeling of the extracellular matrix (ECM). Tissue inhibitors of metalloproteinases (TIMPs), a family of four in humans, are endogenous inhibitors of MMPs. TIMPs have a high level of sequence and structure homology, with a broad range of binding and inhibition to the family of MMPs. It is important to identify the key motifs of TIMPs responsible for inhibition of MMPs to develop efficient therapeutics targeting specific MMPs. We used DNA shuffling between the human TIMP family to generate a minimal TIMP hybrid library in yeast to identify the dominant minimal MMP inhibitory regions. The minimal TIMP variants screened toward MMP-3 and MMP-9 using fluorescent-activated cell sorting (FACS). Interestingly, several minimal TIMP variants selected after screening toward MMP-3cd or MMP-9cd, with lengths as short as 20 amino acids, maintained or improved binding to MMP-3 and MMP-9. The TIMP-MMP binding dissociation constant (K

Indexed as

Matrix Metalloproteinase 3Matrix Metalloproteinase 9HumansMolecular Docking SimulationSaccharomyces cerevisiaeTissue Inhibitor of MetalloproteinasesMatrix Metalloproteinase 3Matrix Metalloproteinase 9Tissue Inhibitor of Metalloproteinasesdirected evolutionDNA shufflingmatrix metalloproteinasemolecular dynamics simulationsprotein dockingprotein engineeringtissue inhibitor of metalloproteinaseyeast surface display

Identifiers

PMID37807423
PMCPMC10659938
OpenAlexW4387439181

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.