Evidence map›Paper›PMID 37805667›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2023

Swine global genomic resources: insights into wild and domesticated populations.

Neal R Benjamin, Richard P M A Crooijmans, Luke R Jordan, Courtni R Bolt, Lawrence B Schook, Kyle M Schachtschneider, Martien A M Groenen, Alfred L Roca

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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Neal R Benjamin *The Program in Ecology, Evolution and Conservation Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Richard P M A Crooijmans *Animal Breeding and Genomics, Wageningen University and Research, Wageningen, The Netherlands. richard.crooijmans@wur.nl.ORCID 0000-0001-8108-9972
Luke R JordanDepartment of Radiology, University of Illinois at Chicago, Chicago, IL, USA.
Courtni R BoltDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Lawrence B SchookDepartment of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID 0000-0002-6580-8364
Kyle M SchachtschneiderNational Center for Supercomputing Applications, University of Illinois at Chicago, Chicago, IL, USA. kschach2@uic.edu.ORCID 0000-0002-7293-8642
Martien A M Groenen *Animal Breeding and Genomics, Wageningen University and Research, Wageningen, The Netherlands.ORCID 0000-0003-0484-4545
Alfred L Roca *The Program in Ecology, Evolution and Conservation Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA. roca@illinois.edu.ORCID 0000-0001-9217-5593

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Suids, both domesticated and wild, are found on all continents except for Antarctica and provide valuable food resources for humans in addition to serving as important models for biomedical research. Continuing advances in genome sequencing have allowed researchers to compare the genomes from diverse populations of suids helping to clarify their evolution and dispersal. Further analysis of these samples may provide clues to improve disease resistance/resilience and productivity in domestic suids as well as better ways of classifying and conserving genetic diversity within wild and captive suids. Collecting samples from diverse populations of suids is resource intensive and may negatively impact endangered populations. Here we catalog extensive tissue and DNA samples from suids in collections in both Europe and North America. We include samples that have previously been used for whole genome sequencing, targeted DNA sequencing, RNA sequencing, and reduced representation bisulfite sequencing (RRBS). This work provides an important centralized resource for researchers who wish to access published databases.

Indexed as

GenomeGenomicsAnimalsDNAHumansSequence Analysis, DNASwineWhole Genome SequencingDNA

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.