Evidence map›Paper›PMID 37805627›Full record

ArticleNature communications2023

Super-enhancer hijacking drives ectopic expression of hedgehog pathway ligands in meningiomas.

Mark W Youngblood, Zeynep Erson-Omay, Chang Li, Hinda Najem, Süleyman Coșkun, Evgeniya Tyrtova, Julio D Montejo, Danielle F Miyagishima, Tanyeri Barak, Sayoko Nishimura and 27 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  6. Mechanisms of enhancer-driven oncogene activation.International journal of cancer · 2026
    Review
  7. Article
  8. Cancer stem cells in meningiomas: novel insights and therapeutic implications.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2025
    Review
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 17 institutions in 5 countries.

Mark W YoungbloodYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-1044-8015
Zeynep Erson-OmayYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Chang LiYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Hinda NajemDepartment of Neurological Surgery, Malnati Brain Tumor Institute of the Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID 0000-0003-4432-9708
Süleyman CoșkunYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Evgeniya TyrtovaYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Julio D MontejoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-2166-4861
Danielle F MiyagishimaYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-3257-5469
Tanyeri BarakYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Sayoko NishimuraYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0008-8396-1267
Akdes Serin HarmancıYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Victoria E ClarkYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Daniel DuranYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6888-252X
Anita HuttnerYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Timuçin AvşarDepartment of Neurosurgery, Bahcesehir University, School of Medicine, Istanbul, Turkey.
Yasar BayriDepartment of Neurosurgery, Marmara University School of Medicine, 34854, Istanbul, Turkey.
Johannes SchrammUniversity of Bonn Medical School, 53105, Bonn, Germany.
Julien BoettoDepartment of Neurosurgery, Hopital Pitie-Salpetriere, AP-HP & Sorbonne Université, F-75103, Paris, France.
Matthieu PeyreDepartment of Neurosurgery, Hopital Pitie-Salpetriere, AP-HP & Sorbonne Université, F-75103, Paris, France.ORCID 0000-0001-8470-9516
Maximilien RicheDepartment of Neurosurgery, Hopital Pitie-Salpetriere, AP-HP & Sorbonne Université, F-75103, Paris, France.
Roland GoldbrunnerCenter for Neurosurgery, University Hospital of Cologne, 50937, Cologne, Germany.
Nduka AmankulorDepartment of Neurosurgery, University of Pennsylvania, Philadelphia, PA, USA.
Angeliki LouviYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-1737-8707
Kaya BilgüvarYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
M Necmettin PamirDepartment of Neurosurgery, Acibadem Mehmet Ali Aydınlar University, School of Medicine, Istanbul, 34848, Turkey.
Koray ÖzdumanDepartment of Neurosurgery, Acibadem Mehmet Ali Aydınlar University, School of Medicine, Istanbul, 34848, Turkey.
Türker KilicDepartment of Neurosurgery, Bahcesehir University, School of Medicine, Istanbul, Turkey.
James R KnightYale Center for Genome Analysis, Yale University West Campus, Orange, CT, USA.ORCID 0000-0003-1166-0437
Matthias SimonUniversity of Bonn Medical School, 53105, Bonn, Germany.
Craig HorbinskiDepartment of Neurological Surgery, Malnati Brain Tumor Institute of the Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID 0000-0001-8340-9992
Michel KalamaridesDepartment of Neurosurgery, Hopital Pitie-Salpetriere, AP-HP & Sorbonne Université, F-75103, Paris, France.
Marco TimmerCenter for Neurosurgery, University Hospital of Cologne, 50937, Cologne, Germany.
Amy B HeimbergerDepartment of Neurological Surgery, Malnati Brain Tumor Institute of the Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID 0000-0002-9970-8695
Ketu Mishra-GorurYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3182-4411
Jennifer MoliternoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA.
Katsuhito YasunoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA. katsuhito.yasuno@yale.edu.ORCID 0000-0002-3606-532X
Murat GünelYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, CT, USA. murat.gunel@yale.edu.ORCID 0000-0002-2290-7055
Yale Cancer Center · USNorthwestern University · USSorbonne Université · FRBahçeşehir University · TRKent Hastanesi · TRUniversity Hospital Cologne · DEUniversity of Bonn · DEBaylor College of Medicine · USDartmouth–Hitchcock Medical Center · USHarvard University · USMarmara University · TRMiddle East Technical University · TRSun Yat-sen University · CNUniversité de Montpellier · FRUniversity of Pennsylvania · USUniversity of Washington · USYale University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
STINGing GBM: A First-in- Man Clinical Trial in Surgical Resectable Recurrent GBMP50CA221747 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Atique U. Ahmed · 2018 to 2026
$21.4M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
Stinging the Glioma Immune LandscapeR01NS120547 · NINDS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HEIMBERGER, AMY BETH, RAO, ARVIND · 2020 to 2023
$1.1M
Characterizing the genomic architecture and molecular mechanisms driving the formF30CA183530 · NCI · YALE UNIVERSITY · PI CLARK, VICTORIA · 2014 to 2016
$121k
PBAF Signaling in Meningioma TumorigenesisF30CA213666 · NCI · YALE UNIVERSITY · PI YOUNGBLOOD, MARK · 2018 to 2019
$40k
NCATS NIH HHS UL1 TR001863NCI NIH HHS F30 CA183530NCI NIH HHS F30 CA213666NCI NIH HHS P30 CA060553NCI NIH HHS P50 CA221747NIGMS NIH HHS T32 GM007205NIH HHS S10 OD030363NINDS NIH HHS R01 NS120547
6 · The paper itself

Abstract

Hedgehog signaling mediates embryologic development of the central nervous system and other tissues and is frequently hijacked by neoplasia to facilitate uncontrolled cellular proliferation. Meningiomas, the most common primary brain tumor, exhibit Hedgehog signaling activation in 6.5% of cases, triggered by recurrent mutations in pathway mediators such as SMO. In this study, we find 35.6% of meningiomas that lack previously known drivers acquired various types of somatic structural variations affecting chromosomes 2q35 and 7q36.3. These cases exhibit ectopic expression of Hedgehog ligands, IHH and SHH, respectively, resulting in Hedgehog signaling activation. Recurrent tandem duplications involving IHH permit de novo chromatin interactions between super-enhancers within DIRC3 and a locus containing IHH. Our work expands the landscape of meningioma molecular drivers and demonstrates enhancer hijacking of Hedgehog ligands as a route to activate this pathway  in neoplasia.

Indexed as

Meningeal NeoplasmsMeningiomaHedgehog ProteinsHumansLigandsSignal TransductionHedgehog ProteinsLigands

Identifiers

PMID37805627
PMCPMC10560290
OpenAlexW4387424744

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.