Evidence map›Paper›PMID 37805614›Full record

ArticleNature communications2023

Machine learning electronic structure methods based on the one-electron reduced density matrix.

Xuecheng Shao, Lukas Paetow, Mark E Tuckerman, Michele Pavanello

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  9. Predicting the One-Particle Density Matrix with Machine Learning.Journal of chemical theory and computation · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Xuecheng ShaoDepartment of Chemistry, Rutgers University, Newark, NJ, 07102, USA. xuecheng.shao@rutgers.edu.ORCID http://orcid.org/0000-0003-2215-0926
Lukas PaetowDepartment of Chemistry, Rutgers University, Newark, NJ, 07102, USA.
Mark E TuckermanDepartment of Chemistry, New York University, New York, NY, 10003, USA. mark.tuckerman@nyu.edu.ORCID http://orcid.org/0000-0003-2194-9955
Michele PavanelloDepartment of Chemistry, Rutgers University, Newark, NJ, 07102, USA. m.pavanello@rutgers.edu.ORCID http://orcid.org/0000-0001-8294-7481
Rutgers, The State University of New Jersey · USNew York University Shanghai · CN

Funding

ACS | American Chemical Society Petroleum Research Fund (ACS Petroleum Research Fund) 62555-ND6Camille and Henry Dreyfus Foundation (Camille and Henry Dreyfus Foundation, Inc.) ML-22-146
6 · The paper itself

Abstract

The theorems of density functional theory (DFT) establish bijective maps between the local external potential of a many-body system and its electron density, wavefunction and, therefore, one-particle reduced density matrix. Building on this foundation, we show that machine learning models based on the one-electron reduced density matrix can be used to generate surrogate electronic structure methods. We generate surrogates of local and hybrid DFT, Hartree-Fock and full configuration interaction theories for systems ranging from small molecules such as water to more complex compounds like benzene and propanol. The surrogate models use the one-electron reduced density matrix as the central quantity to be learned. From the predicted density matrices, we show that either standard quantum chemistry or a second machine-learning model can be used to compute molecular observables, energies, and atomic forces. The surrogate models can generate essentially anything that a standard electronic structure method can, ranging from band gaps and Kohn-Sham orbitals to energy-conserving ab-initio molecular dynamics simulations and infrared spectra, which account for anharmonicity and thermal effects, without the need to employ computationally expensive algorithms such as self-consistent field theory. The algorithms are packaged in an efficient and easy to use Python code, QMLearn, accessible on popular platforms.

Identifiers

PMID37805614
PMCPMC10560258
OpenAlexW4387424368

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.