Evidence map›Paper›PMID 37805522›Full record

ArticleNature communications2023

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin.

Qian Xiao, Joseph Mears, Aparna Nathan, Kazuyoshi Ishigaki, Yuriy Baglaenko, Noha Lim, Laura A Cooney, Kristina M Harris, Mark S Anderson, David A Fox and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Redox Pathogenesis in Rheumatic Diseases.ACR open rheumatology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Qian Xiao *Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA.
Joseph Mears *Center for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA.
Aparna NathanCenter for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA.
Kazuyoshi IshigakiCenter for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0003-2881-0657
Yuriy BaglaenkoCenter for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA.
Noha LimImmune Tolerance Network, Diabetes Center, University of California, San Francisco, San Francisco, CA, USA.
Laura A CooneyImmune Tolerance Network, Diabetes Center, University of California, San Francisco, San Francisco, CA, USA.
Kristina M HarrisImmune Tolerance Network, Diabetes Center, University of California, San Francisco, San Francisco, CA, USA.
Mark S AndersonImmune Tolerance Network, Diabetes Center, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-3093-4758
David A FoxDivision of Rheumatology, Department of Internal Medicine and Clinical Autoimmunity Center of Excellence, University of Michigan, Ann Arbor, MI, USA.
Dawn E SmilekImmune Tolerance Network, Diabetes Center, University of California, San Francisco, San Francisco, CA, USA.
James G KruegerLaboratory for Investigative Dermatology, The Rockefeller University, New York, NY, USA.
Soumya RaychaudhuriCenter for Data Sciences, Brigham and Women's Hospital, Boston, MA, USA. soumya@broadinstitute.org.ORCID 0000-0002-1901-8265
Broad Institute · USUniversity of California, San Francisco · USRockefeller University · USUniversity of Michigan · US

Funding

Immune Tolerance Network UM1 2023 SupplementUM1AI109565 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI Mark S Anderson, Jane Hoyt Buckner · 2014 to 2026
$451.6M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Discovery and Functional Impact of Common and Rare Variants in RAR01AR063759 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Soumya Raychaudhuri · 2013 to 2026
$5.4M
University of Michigan Clinical Autoimmunity Center of ExcellenceUM1AI144298 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FOX, DAVID ALAN, KHANNA, DINESH · 2019 to 2023
$546k
University of Michigan Autoimmunity Center of Excellence, Clinical Research ProgrUM1AI110557 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FOX, DAVID ALAN · 2014 to 2018
$543k
NHGRI NIH HHS T32 HG002295NIAID NIH HHS UM1 AI109565NIAID NIH HHS UM1 AI110557NIAID NIH HHS UM1 AI144298NIAMS NIH HHS R01 AR063759
6 · The paper itself

Abstract

Psoriasis is a chronic, systemic inflammatory condition primarily affecting skin. While the role of the immune compartment (e.g., T cells) is well established, the changes in the skin compartment are more poorly understood. Using longitudinal skin biopsies (n = 375) from the "Psoriasis Treatment with Abatacept and Ustekinumab: A Study of Efficacy"(PAUSE) clinical trial (n = 101), we report 953 expression quantitative trait loci (eQTLs). Of those, 116 eQTLs have effect sizes that were modulated by local skin inflammation (eQTL interactions). By examining these eQTL genes (eGenes), we find that most are expressed in the skin tissue compartment, and a subset overlap with the NRF2 pathway. Indeed, the strongest eQTL interaction signal - rs1491377616-LCE3C - links a psoriasis risk locus with a gene specifically expressed in the epidermis. This eQTL study highlights the potential to use biospecimens from clinical trials to discover in vivo eQTL interactions with therapeutically relevant environmental variables.

Indexed as

PsoriasisQuantitative Trait LociBiopsyGenome-Wide Association StudyHumansImmunosuppression TherapyPolymorphism, Single NucleotideSkin

Identifiers

PMID37805522
PMCPMC10560299
OpenAlexW4387426051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.