Evidence map›Paper›PMID 37802886›Full record

ArticleHuman molecular genetics2024

Dysregulation of alternative splicing in spinocerebellar ataxia type 1.

Victor Olmos, Evrett N Thompson, Neha Gogia, Kimberly Luttik, Vaishnavi Veeranki, Luhan Ni, Serena Sim, Kelly Chen, Diane S Krause, Janghoo Lim

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Victor OlmosDepartment of Genetics, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Evrett N ThompsonDepartment of Cell Biology, Yale School of Medicine, 10 Amistad Street, New Haven, CT 06510, United States.
Neha GogiaDepartment of Genetics, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Kimberly LuttikInterdepartmental Neuroscience Program, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Vaishnavi VeerankiDepartment of Genetics, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Luhan NiDepartment of Genetics, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Serena SimYale College, 433 Temple Street, New Haven, CT 06510, United States.
Kelly ChenYale College, 433 Temple Street, New Haven, CT 06510, United States.
Diane S KrauseDepartment of Cell Biology, Yale School of Medicine, 10 Amistad Street, New Haven, CT 06510, United States.
Janghoo LimDepartment of Genetics, Yale School of Medicine, 295 Congress Avenue, New Haven, CT 06510, United States.
Yale University · USYale Cancer Center · US

Funding

GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
NEUROBIOLOGY OF CORTICAL SYSTEMST32NS007224 · NINDS · YALE UNIVERSITY · PI CARDIN, JESSICA A · 1985 to 2025
$4.6M
Evaluation of a novel NLK function in lysosome biogenesis and neurodegenerative diseasesR01AG074609 · NIA · YALE UNIVERSITY · PI LIM, JANGHOO · 2021 to 2025
$4.0M
Investigation of the role of ATXN1 in oligodendroglia and neurodegenerative diseasesR01AG076154 · NIA · YALE UNIVERSITY · PI Janghoo Lim · 2022 to 2026
$3.5M
Microglial regulation of Progranulin levelsR01AG066447 · NIA · YALE UNIVERSITY · PI LIM, JANGHOO · 2020 to 2024
$3.1M
Investigating the Pathogenesis of Cerebellar NeurodegenerationR01NS083706 · NINDS · YALE UNIVERSITY · PI LIM, JANGHOO · 2014 to 2018
$1.8M
NIA NIH HHS R01 AG066447NIA NIH HHS R01 AG074609NIA NIH HHS R01 AG076154NICHD NIH HHS T32 HD007149NINDS NIH HHS R01 NS083706NINDS NIH HHS T32 NS007224
6 · The paper itself

Abstract

Spinocerebellar ataxia type 1 is caused by an expansion of the polyglutamine tract in ATAXIN-1. Ataxin-1 is broadly expressed throughout the brain and is involved in regulating gene expression. However, it is not yet known if mutant ataxin-1 can impact the regulation of alternative splicing events. We performed RNA sequencing in mouse models of spinocerebellar ataxia type 1 and identified that mutant ataxin-1 expression abnormally leads to diverse splicing events in the mouse cerebellum of spinocerebellar ataxia type 1. We found that the diverse splicing events occurred in a predominantly cell autonomous manner. A majority of the transcripts with misregulated alternative splicing events were previously unknown, thus allowing us to identify overall new biological pathways that are distinctive to those affected by differential gene expression in spinocerebellar ataxia type 1. We also provide evidence that the splicing factor Rbfox1 mediates the effect of mutant ataxin-1 on misregulated alternative splicing and that genetic manipulation of Rbfox1 expression modifies neurodegenerative phenotypes in a Drosophila model of spinocerebellar ataxia type 1 in vivo. Together, this study provides novel molecular mechanistic insight into the pathogenesis of spinocerebellar ataxia type 1 and identifies potential therapeutic strategies for spinocerebellar ataxia type 1.

Indexed as

Alternative SplicingSpinocerebellar AtaxiasAnimalsAtaxin-1Ataxin-3BrainMiceNerve Tissue ProteinsAtaxin-1Ataxin-3Nerve Tissue Proteinsalternative splicingneurodegenerationPurkinje cellspinocerebellar ataxia type 1

Identifiers

PMID37802886
PMCPMC10979408
OpenAlexW4387393452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.