Evidence map›Paper›PMID 37802044›Full record

ArticleAmerican journal of human genetics2023

Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction.

Xi Shi, Congyi Lu, Alba Corman, Alexandra Nikish, Yang Zhou, Randy J Platt, Ivan Iossifov, Feng Zhang, Jen Q Pan, Neville E Sanjana

Open access · greenAbstract read
In one paragraph

Article in American journal of human genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Rbp-Jκ controls NK cell late maturation and migration via chromatin landscape remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  7. TALE and Hox Transcription Factors Control Adult Behaviors in Zebrafish.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Large-scale discovery of neural enhancers for cis-regulation therapies.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
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  12. Review
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  15. Article
  16. Decoding the genetic landscape of autism: A comprehensive review.World journal of clinical pediatrics · 2024
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Xi ShiDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Bioengineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute, Cambridge, MA, USA; Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA, USA.
Congyi LuNew York Genome Center, New York, NY, USA; Department of Biology, New York University, New York, NY, USA.
Alba CormanNew York Genome Center, New York, NY, USA; Department of Biology, New York University, New York, NY, USA.
Alexandra NikishDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Bioengineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute, Cambridge, MA, USA.
Yang ZhouDepartment of Neurology and Neurosurgery, McGill University, Montreal, QC, Canada; Montreal Neurological Institute, Montreal, QC, Canada.
Randy J PlattDepartment of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland.
Ivan IossifovNew York Genome Center, New York, NY, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
Feng ZhangDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Bioengineering, Massachusetts Institute of Technology, Cambridge, MA, USA; Broad Institute, Cambridge, MA, USA.
Jen Q PanStanley Center for Psychiatric Research, Broad Institute, Cambridge, MA, USA. Electronic address: jpan@broadinstitute.org.
Neville E SanjanaNew York Genome Center, New York, NY, USA; Department of Biology, New York University, New York, NY, USA. Electronic address: neville@sanjanalab.org.
Broad Institute · USNew York Genome Center · USCold Spring Harbor Laboratory · USETH Zurich · CHMontreal Neurological Institute and Hospital · CA

Funding

In situ functional genomics to understand transcriptional regulationDP2HG010099 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2017 to 2022
$4.4M
Enhancing Susceptibility of HIV Reservoirs to CTL Through a Discovery to Translational ApproachR01AI176601 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI R. Brad Jones, Neville Sanjana · 2023 to 2026
$3.3M
LTBR CARs as next-generation therapies for R/R lymphomaR01CA279135 · NCI · NEW YORK GENOME CENTER · PI Catherine Sibyl Diefenbach, Neville Sanjana · 2023 to 2026
$3.2M
Genome engineering tools for functional screening of non-coding elementsR00HG008171 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2016 to 2018
$733k
NCI NIH HHS R01 CA279135NHGRI NIH HHS DP2 HG010099NHGRI NIH HHS R00 HG008171NIAID NIH HHS R01 AI176601
6 · The paper itself

Abstract

Whole-exome sequencing of autism spectrum disorder (ASD) probands and unaffected family members has identified many genes harboring de novo variants suspected to play a causal role in the disorder. Of these, chromodomain helicase DNA-binding protein 8 (CHD8) is the most recurrently mutated. Despite the prevalence of CHD8 mutations, we have little insight into how CHD8 loss affects genome organization or the functional consequences of these molecular alterations in neurons. Here, we engineered two isogenic human embryonic stem cell lines with CHD8 loss-of-function mutations and characterized differences in differentiated human cortical neurons. We identified hundreds of genes with altered expression, including many involved in neural development and excitatory synaptic transmission. Field recordings and single-cell electrophysiology revealed a 3-fold decrease in firing rates and synaptic activity in CHD8

Indexed as

Autism Spectrum DisorderAutistic DisorderAnimalsChromatinDNA-Binding ProteinsGene ExpressionHumansMiceTranscription FactorsCHD8 protein, humanChromatinDNA-Binding ProteinsTranscription FactorsASDautismCHD8chromatinchromodomainCRISPRhelicaseisogenicneurodevelopmentsynaptic transmission

Identifiers

PMID37802044
PMCPMC10577079
OpenAlexW4387378177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.