Evidence map›Paper›PMID 37801070›Full record

ArticleThe Journal of cell biology2023

The TMEM192-mKeima probe specifically assays lysophagy and reveals its initial steps.

Takayuki Shima, Monami Ogura, Ruriko Matsuda, Shuhei Nakamura, Natsuko Jin, Tamotsu Yoshimori, Akiko Kuma

Abstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Selective autophagy in kidney health and disease.Nature reviews. Nephrology · 2026
    Review
  2. Article
  3. Article
  4. Review
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  7. Article
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  12. UBE2L3 expression in human gastric cancer and its clinical significance.Journal of cancer research and clinical oncology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Takayuki ShimaDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0003-4480-3959
Monami OguraDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0009-0000-3311-7836
Ruriko MatsudaDepartment of Intracellular Membrane Dynamics, Graduate School of Frontier Biosciences, Osaka University, Osaka, Japan.ORCID 0009-0001-0806-205X
Shuhei NakamuraDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0002-1488-8317
Natsuko JinDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0002-0231-3057
Tamotsu YoshimoriDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0000-0001-9787-3788
Akiko KumaDepartment of Genetics, Graduate School of Medicine, Osaka University, Osaka, Japan.ORCID 0009-0009-0451-6307

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membrane rupture of lysosomes results in leakage of their contents, which is harmful to cells. Recent studies have reported that several systems contribute to the repair or elimination of damaged lysosomes. Lysophagy is a type of selective autophagy that plays a crucial role in the lysosomal damage response. Because multiple pathways are involved in this response, an assay that specifically evaluates lysophagy is needed. Here, we developed the TMEM192-mKeima probe to evaluate lysophagy. By comparing the use of this probe with the conventional galectin-3 assay, we showed that this probe is more specific to lysophagy. Using TMEM192-mKeima, we showed that TFEB and p62 are important for the lysosomal damage response but not for lysophagy, although they have previously been considered to be involved in lysophagy. We further investigated the initial steps in lysophagy and identified UBE2L3, UBE2N, TRIM10, 16, and 27 as factors involved in it. Our results demonstrate that the TMEM192-mKeima probe is a useful tool for investigating lysophagy.

Indexed as

AutophagyMacroautophagyMolecular ProbesLysosomesMolecular Probes

Identifiers

PMID37801070
PMCPMC10558291

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.