ArticleFrontiers in bioinformatics2023
NeighborNet: improved algorithms and implementation.
Article in Frontiers in bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
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- Host specificity and horizontal gene transfer in the MIB-MIP immunoglobulin evasion system in Mycoplasma gallisepticum.Veterinary research · 2026Article
- Fast-nnt: fast, reproducible, and scalable neighbour network analysis in R, Python, and CLI.Bioinformatics (Oxford, England) · 2026Article
- Insights into Genetic Diversity Within the Auliekol Cattle Breed Using SNP Genotyping.Animals : an open access journal from MDPI · 2026Article
- Novel insights into tomato leaf curl New Delhi virus introduction and evolution in Southeastern France using an advanced long-read sequencing workflow.PLoS pathogens · 2026Article
- Tracking the Evolutionary Trajectory of a Young Hybrid Plant Pathogen.Genome biology and evolution · 2026Article
- Reconstructing building genealogy with visual intelligence.Nature communications · 2026Article
- Evolution of Highly Repetitive Silk Genes in the Luna Moth, Actias luna.Genome biology and evolution · 2026Article
- From Genome Diversity to Inferred Functional Constraints: An Integrated Evolutionary Analysis of Hepatitis B Virus Genotype F.International journal of molecular sciences · 2026Article
- Multiple Glacial Refugia and Complex Postglacial Dynamics ofEcology and evolution · 2026Article
- Repeated losses of self-fertility shaped heterozygosity and polyploidy in yeast evolution.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
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- Thyrostroma parviniae sp. nov., causing bud necrosis and branch dieback in fig trees from Iran.PloS one · 2026Article
- Characterization of the chloroplast genome of a relict tree, Pterocarya fraxinifolia (Juglandaceae), and its comparative analysis.Scientific reports · 2025Article
- American highbush cranberry maintains strong population structure despite naturalization of Eurasian relatives in North America.American journal of botany · 2025Article
- Genetic diversity and reproductive modes of aflatoxin-producing Aspergillus flavus isolated from cashew nuts in coastal Kenya.World journal of microbiology & biotechnology · 2025Article
- Characterization of the Hemagglutinin Gene ofVeterinary sciences · 2025Article
- Taxonomic revision of the critically endangered big-headed turtles (Reptilia: Testudines: Platysternidae Gray, 1869), with description of a new species.Zoological research · 2025Article
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Authors and funding
2 authors.
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No grant is acknowledged in the PubMed record.
Abstract
NeighborNet constructs phylogenetic networks to visualize distance data. It is a popular method used in a wide range of applications. While several studies have investigated its mathematical features, here we focus on computational aspects. The algorithm operates in three steps. We present a new simplified formulation of the first step, which aims at computing a circular ordering. We provide the first technical description of the second step, the estimation of split weights. We review the third step by constructing and drawing the network. Finally, we discuss how the networks might best be interpreted, review related approaches, and present some open questions.
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