ArticleHorticulture research2023
Large-scale population structure and genetic architecture of agronomic traits of garlic.
Article in Horticulture research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed, 15 citations in OpenAlex.
- Optimised strategies for read mapping and snp filtering of highly fragmented DNA from keratinised tissues.International journal of legal medicine · 2026Article
- Garlic Ideotypes for Future Korean Climates.Plants (Basel, Switzerland) · 2026Article
- Development of KASP molecular markers and fingerprinting based on reduced representation genome sequencing of garlic.Frontiers in plant science · 2026Article
- Genomic selection and genetic architecture of agronomic traits during modern flowering Chinese cabbage breeding.Horticulture research · 2025Article
- Integrated genome-wide association and transcriptomic studies reveal genetic architecture of bulb storability of plentiful garlic germplasm resources.Horticulture research · 2024Article
- Genome-Wide Development of InDel-SSRs and Association Analysis of Important Agronomic Traits of Taro (Current issues in molecular biology · 2024Article
- AlliumDB: a central portal for comparative and functional genomics inHorticulture research · 2024Article
- Deprivation of Sexual Reproduction during Garlic Domestication and Crop Evolution.International journal of molecular sciences · 2023Article
- Genome resequencing reveals the evolutionary history of garlic reproduction traits.Horticulture research · 2023Article
Corrections and comments
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Garlic, an asexually propagated crop, is the second important bulb crop after the onion and is used as a vegetable and medicinal plant. Abundant and diverse garlic resources have been formed over thousands of years of cultivation. However, genome variation, population structure and genetic architecture of garlic agronomic traits were still not well elucidated. Here, 1 100 258 single nucleotide polymorphisms (SNPs) were identified using genotyping-by-sequencing in 606 garlic accessions collected from 43 countries. Population structure, principal component and phylogenetic analysis showed that these accessions were divided into five subpopulations. Twenty agronomic traits, including above-ground growth traits, bulb-related and bolt-related traits in two consecutive years were implemented in a genome-wide association study. In total, 542 SNPs were associated with these agronomic traits, among which 188 SNPs were repeatedly associated with more than two traits. One SNP (chr6: 1896135972) was repeatedly associated with ten traits. These associated SNPs were located within or near 858 genes, 56 of which were transcription factors. Interestingly, one non-synonymous SNP (Chr4: 166524085) in
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Registered trials
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