Evidence map›Paper›PMID 37799539›Full record

ArticleIJID regions2023

SARS-CoV-2 lineages circulating during the first wave of the pandemic in North Sumatra, Indonesia.

Ramadhan Bestari, Irbah Rea Alvieda Nainggolan, Mirzan Hasibuan, Rima Ratnanggana, Krisnoadi Rahardjo, Aldise Mareta Nastri, Jezzy Renova Dewantari, Soetjipto Soetjipto, Maria Inge Lusida, Yasuko Mori and 4 more

Open access · goldAbstract read
In one paragraph

Article in IJID regions, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Potency ofThe Kobe journal of medical sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ramadhan BestariFaculty of Medicine, Universitas Islam Sumatera Utara, Medan, Indonesia.
Irbah Rea Alvieda NainggolanFaculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia.
Mirzan HasibuanFaculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia.
Rima RatnangganaInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Krisnoadi RahardjoInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Aldise Mareta NastriInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Jezzy Renova DewantariInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Soetjipto SoetjiptoInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Maria Inge LusidaInstitute of Tropical Disease, Airlangga University, Surabaya, Indonesia.
Yasuko MoriCenter for Infectious Diseases, Kobe University Graduate School of Medicine, Chuo-ku, Japan.
Kazufumi ShimizuCenter for Infectious Diseases, Kobe University Graduate School of Medicine, Chuo-ku, Japan.
R Lia KusumawatiFaculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia.
Muhammad IchwanFaculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia.
Inke Nadia Diniyanti LubisFaculty of Medicine, Universitas Sumatera Utara, Medan, Indonesia.
Airlangga University · IDUniversitas Sumatera Utara · IDKobe University · JPNorth Sumatra Islamic University · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: To determine the lineage distribution of the virus during the first wave of the pandemic in North Sumatra, Indonesia. Methods: A total of 20 samples with positive results based on reverse transcription-polymerase chain reaction were selected for virus culture and then performed whole-genome sequence analysis using next-generation sequencing which was applied by the Illumina MiSeq instrument. Results: Whole-genome sequence analysis revealed that the majority of our samples belong to lineages B.1.468 (n = 10), B.1 (n = 5), B.1.1 (n = 2), B.1.1.398 (n = 2), and B.6 (n = 1). Other unique amino acid mutations found in our samples were present in A58T on non-structural protein (NSP3) (70%), P323L on NSP12 (95%), Q57H on NS3 protein (75%), and D614G on S (100%). Conclusion: The SARS-CoV-2 lineage B.1.468 may be the main virus variant circulating in North Sumatra at the beginning of the emergence of COVID-19 cases in this province.

Indexed as

D614GLineage B.1.468North SumateraSARS-CoV-2Whole-genome sequence

Identifiers

PMID37799539
PMCPMC10548867
OpenAlexW4385615172

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.