Evidence map›Paper›PMID 37798411›Full record

ArticleNature neuroscience2023

Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition.

Jessica L Zhou, Giordano de Guglielmo, Aaron J Ho, Marsida Kallupi, Narayan Pokhrel, Hai-Ri Li, Apurva S Chitre, Daniel Munro, Pejman Mohammadi, Lieselot L G Carrette and 4 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature neuroscience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Jessica L ZhouBioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-4131-0756
Giordano de GuglielmoDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-4782-7430
Aaron J HoIntegrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.
Marsida KallupiDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-8688-709X
Narayan PokhrelDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.
Hai-Ri LiDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.
Apurva S ChitreDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.
Daniel MunroDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-0724-218X
Pejman MohammadiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Lieselot L G CarretteDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-5217-2774
Olivier GeorgeDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-3700-5003
Abraham A PalmerDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0003-3634-0747
Graham McVickerBioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA. gmcvicker@salk.edu.ORCID 0000-0003-0991-0951
Francesca TeleseDepartment of Psychiatry, University of California, San Diego, La Jolla, CA, USA. ftelese@health.ucsd.edu.ORCID 0000-0003-3877-0628
University of California San Diego · USSalk Institute for Biological Studies · USScripps Research Institute · US

Funding

Sequencing CoreP50DA037844 · NIDA · UNIVERSITY OF CHICAGO · PI SOLBERG WOODS, LEAH CATHERINE · 2014 to 2023
$27.4M
Identification of Genetic Variants that Contribute to Compulsive Cocaine Intakein RatsU01DA043799 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Olivier George, Abraham A Palmer · 2017 to 2026
$7.9M
Single-cell resolution analysis of chromatin accessibility and gene expression changes in a model of drug addictionU01DA050239 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GRAHAM MCVICKER, Abraham A Palmer · 2020 to 2026
$4.4M
Haplotype-aware models of gene and isoform expression with application to genetic studies of disease in diverse populationsR01GM140287 · NIGMS · SEATTLE CHILDREN'S HOSPITAL · PI GAMAZON, ERIC R, MOHAMMADI, PEJMAN · 2021 to 2024
$2.8M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Computational analysis of single-nucleus sequencing data for studying the cell type-specific basis of opioid use disordersF31DA056226 · NIDA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ZHOU, JESSICA LU · 2022 to 2023
$68k
NIDA NIH HHS F31 DA056226NIDA NIH HHS P50 DA037844NIDA NIH HHS U01 DA043799NIDA NIH HHS U01 DA050239NIGMS NIH HHS R01 GM140287NIH HHS S10 OD026929
6 · The paper itself

Abstract

The amygdala processes positive and negative valence and contributes to addiction, but the cell-type-specific gene regulatory programs involved are unknown. We generated an atlas of single-nucleus gene expression and chromatin accessibility in the amygdala of outbred rats with high and low cocaine addiction-like behaviors following prolonged abstinence. Differentially expressed genes between the high and low groups were enriched for energy metabolism across cell types. Rats with high addiction index (AI) showed increased relapse-like behaviors and GABAergic transmission in the amygdala. Both phenotypes were reversed by pharmacological inhibition of the glyoxalase 1 enzyme, which metabolizes methylglyoxal-a GABA

Indexed as

CocaineCocaine-Related DisordersAmygdalaAnimalsChromatinHumansNeuronsRatsChromatinCocaine

Identifiers

PMID37798411
PMCPMC10620093
OpenAlexW4387363851

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.