Evidence map›Paper›PMID 37798384›Full record

ArticleScientific reports2023

Design of hypoxia responsive CRISPR-Cas9 for target gene regulation.

Yan An, Chandana S Talwar, Kwang-Hyun Park, Woo-Chan Ahn, Su-Jin Lee, Seong-Ryeong Go, Jin Hwa Cho, Do Yon Kim, Yong-Sam Kim, Sayeon Cho and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Yan An *Division of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Chandana S Talwar *Division of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Kwang-Hyun ParkDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Woo-Chan AhnDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Su-Jin LeeDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Seong-Ryeong GoDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Jin Hwa ChoDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Do Yon KimDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Yong-Sam KimDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Sayeon ChoLaboratory of Molecular and Pharmacological Cell Biology, College of Pharmacy, Chung-Ang University, Seoul, 06974, Republic of Korea.
Jeong-Hoon KimDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea.
Tae-Jip KimDivision of Animal, Horticultural and Food Sciences, Graduate School of Chungbuk National University, Cheongju, 28644, Republic of Korea. tjkim@cbnu.ac.kr.
Eui-Jeon WooDivision of Biomedical Research, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-333, Republic of Korea. ejwoo@kribb.re.kr.
Korea Research Institute of Bioscience and Biotechnology · KRKorea University of Science and Technology · KRChungbuk National University · KRChung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CRISPR-Cas9 system is a widely used gene-editing tool, offering unprecedented opportunities for treating various diseases. Controlling Cas9/dCas9 activity at specific location and time to avoid undesirable effects is very important. Here, we report a conditionally active CRISPR-Cas9 system that regulates target gene expression upon sensing cellular environmental change. We conjugated the oxygen-sensing transcription activation domain (TAD) of hypoxia-inducing factor (HIF-1α) with the Cas9/dCas9 protein. The Cas9-TAD conjugate significantly increased endogenous target gene cleavage under hypoxic conditions compared with that under normoxic conditions, whereas the dCas9-TAD conjugate upregulated endogenous gene transcription. Furthermore, the conjugate system effectively downregulated the expression of SNAIL, an essential gene in cancer metastasis, and upregulated the expression of the tumour-related genes HNF4 and NEUROD1 under hypoxic conditions. Since hypoxia is closely associated with cancer, the hypoxia-dependent Cas9/dCas9 system is a novel addition to the molecular tool kit that functions in response to cellular signals and has potential application for gene therapeutics.

Indexed as

CRISPR-Cas SystemsNeoplasmsCRISPR-Associated Protein 9Gene EditingGene Expression RegulationHumansHypoxiaCRISPR-Associated Protein 9

Identifiers

PMID37798384
PMCPMC10556097
OpenAlexW4387374444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.