Evidence map›Paper›PMID 37798301›Full record

ArticleNature communications2023

The USP46 complex deubiquitylates LRP6 to promote Wnt/β-catenin signaling.

Victoria H Ng, Zachary Spencer, Leif R Neitzel, Anmada Nayak, Matthew A Loberg, Chen Shen, Sara N Kassel, Heather K Kroh, Zhenyi An, Christin C Anthony and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. CRISPR/Cas9-Mediated Disruption ofInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Wnt signalosomes: What we know that we do not know.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. WDR20 prevents hepatocellular carcinoma senescence by orchestrating the simultaneous USP12/46-mediated deubiquitination of c-Myc.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Review
  13. 1-L Transcription of SARS-CoV-2 Spike Protein S1 Subunit.International journal of molecular sciences · 2024
    Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 2 countries.

Victoria H Ng *Department of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.ORCID http://orcid.org/0000-0003-2344-8468
Zachary Spencer *Department of Molecular and Systems Biology and the Dartmouth Cancer Center, Geisel School of Medicine at Dartmouth College, Hanover, NH, 03755, USA.
Leif R NeitzelDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Anmada NayakDepartment of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC, 20057, USA.
Matthew A LobergDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.ORCID http://orcid.org/0000-0001-5840-4591
Chen ShenDepartment of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC, 20057, USA.
Sara N KasselDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.ORCID http://orcid.org/0000-0002-6612-4167
Heather K KrohDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Zhenyi AnUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, 94158, USA.
Christin C AnthonyDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Jamal M BryantDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Amanda LawsonDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.ORCID http://orcid.org/0009-0006-3349-2541
Lily GoldsmithDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Hassina BenchabaneDepartment of Molecular and Systems Biology and the Dartmouth Cancer Center, Geisel School of Medicine at Dartmouth College, Hanover, NH, 03755, USA.
Amanda G HansenDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Jingjing LiDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.ORCID http://orcid.org/0009-0009-9202-0781
Starina D'SouzaDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA.
Andres M LebensohnLaboratory of Cellular and Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-4224-8819
Rajat RohatgiDepartments of Biochemistry, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0001-7609-8858
William A WeissUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0003-2230-9132
Vivian L WeissDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.ORCID http://orcid.org/0000-0003-0874-3207
Charles WilliamsDepartment of Medicine, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Charles C HongDepartment of Medicine, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.ORCID http://orcid.org/0000-0002-0424-8252
David J RobbinsDepartment of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington, DC, 20057, USA.ORCID http://orcid.org/0000-0003-0190-2973
Yashi AhmedDepartment of Molecular and Systems Biology and the Dartmouth Cancer Center, Geisel School of Medicine at Dartmouth College, Hanover, NH, 03755, USA. yashi.ahmed@dartmouth.edu.ORCID http://orcid.org/0000-0002-7472-6010
Ethan LeeDepartment of Cell & Developmental Biology, Vanderbilt University, Nashville, TN, 37232, USA. ethan.lee@vanderbilt.edu.ORCID http://orcid.org/0000-0001-8405-6156
Vanderbilt University · USDartmouth College · USGeorgetown University · USUniversity of Maryland, Baltimore · USVanderbilt University Medical Center · USUniversity of California, San Francisco · USNational Institutes of Health · USStanford University · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Alan Ashworth · 1999 to 2026
$209.7M
Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
Vanderbilt-Ingram Cancer Center SPORE in Gastrointestinal CancerP50CA236733 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STEPHEN W. FESIK · 2019 to 2026
$19.6M
Interdisciplinary Training Program Muscle BiologyT32AR007592 · NIAMS · UNIVERSITY OF MARYLAND BALTIMORE · PI Aikaterini Kontrogianni-Konstantopoulos · 1996 to 2026
$11.7M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Supplement application for an Olympus automated microscopeR35GM118082 · NIGMS · STANFORD UNIVERSITY · PI RAJAT ROHATGI · 2016 to 2026
$7.6M
TRAINING PROGRAM IN CELLULAR, BIOCHEMICAL, &MOLECULAR ST32GM008554 · NIGMS · VANDERBILT UNIVERSITY · PI PATTON, JAMES G. · 1995 to 2020
$7.4M
Mechanism of Wnt signal transductionR35GM122516 · NIGMS · VANDERBILT UNIVERSITY · PI ETHAN LEE · 2017 to 2026
$5.8M
Medical Scientist Training ProgramT32GM152284 · NIGMS · VANDERBILT UNIVERSITY · PI Christopher S. Williams · 2024 to 2026
$4.8M
Cancer Research UK A28592NCI NIH HHS F30 CA281125NCI NIH HHS K08 CA240901NCI NIH HHS P30 CA023108NCI NIH HHS P30 CA082103NCI NIH HHS P50 CA097257NCI NIH HHS P50 CA236733NCI NIH HHS R01 CA219189NCI NIH HHS R01 CA244188NCI NIH HHS R01 CA272875NCI NIH HHS R01 CA281002NCI NIH HHS T32 CA009582NIAMS NIH HHS T32 AR007592NICHD NIH HHS R21 HD101980NIGMS NIH HHS R01 GM118557NIGMS NIH HHS R01 GM121421NIGMS NIH HHS R01 GM122222NIGMS NIH HHS R35 GM118082NIGMS NIH HHS R35 GM122516NIGMS NIH HHS R35 GM136233NIGMS NIH HHS T32 GM007347NIGMS NIH HHS T32 GM008554NIGMS NIH HHS T32 GM152284NIH HHS S10 OD032310
6 · The paper itself

Abstract

The relative abundance of Wnt receptors plays a crucial role in controlling Wnt signaling in tissue homeostasis and human disease. While the ubiquitin ligases that ubiquitylate Wnt receptors are well-characterized, the deubiquitylase that reverses these reactions remains unclear. Herein, we identify USP46, UAF1, and WDR20 (USP46 complex) as positive regulators of Wnt signaling in cultured human cells. We find that the USP46 complex is similarly required for Wnt signaling in Xenopus and zebrafish embryos. We demonstrate that Wnt signaling promotes the association between the USP46 complex and cell surface Wnt coreceptor, LRP6. Knockdown of USP46 decreases steady-state levels of LRP6 and increases the level of ubiquitylated LRP6. In contrast, overexpression of the USP46 complex blocks ubiquitylation of LRP6 by the ubiquitin ligases RNF43 and ZNFR3. Size exclusion chromatography studies suggest that the size of the USP46 cytoplasmic complex increases upon Wnt stimulation. Finally, we show that USP46 is essential for Wnt-dependent intestinal organoid viability, likely via its role in LRP6 receptor homeostasis. We propose a model in which the USP46 complex increases the steady-state level of cell surface LRP6 and facilitates the assembly of LRP6 into signalosomes via a pruning mechanism that removes sterically hindering ubiquitin chains.

Indexed as

beta CateninEndopeptidasesWnt Signaling PathwayAnimalsHumansLigasesLow Density Lipoprotein Receptor-Related Protein-6Receptors, WntUbiquitinZebrafishbeta CateninEndopeptidasesLigasesLow Density Lipoprotein Receptor-Related Protein-6LRP6 protein, humanReceptors, WntUbiquitinubiquitin-specific peptidase 46, human

Identifiers

PMID37798301
PMCPMC10556042
OpenAlexW4387374517

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.