Evidence map›Paper›PMID 37796894›Full record

ArticleFEMS microbiology ecology2023

Abrupt permafrost thaw triggers activity of copiotrophs and microbiome predators.

Maria Scheel, Athanasios Zervas, Ruud Rijkers, Alexander T Tveit, Flemming Ekelund, Francisco Campuzano Jiménez, Torben R Christensen, Carsten S Jacobsen

Open access · hybridAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 5 countries.

Maria ScheelDepartment of Environmental Science, Aarhus University, Roskilde 4000, Denmark.ORCID 0000-0001-8929-417X
Athanasios ZervasDepartment of Environmental Science, Aarhus University, Roskilde 4000, Denmark.ORCID 0000-0002-4706-4023
Ruud RijkersDepartment of Ecological Science, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands.
Alexander T TveitDepartment of Arctic and Marine Biology, University of Tromsø, Tromsø 9019, Norway.
Flemming EkelundDepartment of Environmental Science, Aarhus University, Roskilde 4000, Denmark.
Francisco Campuzano JiménezDepartment of Environmental Science, Aarhus University, Roskilde 4000, Denmark.
Torben R ChristensenDepartment of Ecoscience, Aarhus University, Roskilde 4000, Denmark.
Carsten S JacobsenDepartment of Environmental Science, Aarhus University, Roskilde 4000, Denmark.
Aarhus University · DKStockholm University · SEUiT The Arctic University of Norway · NOUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Permafrost soils store a substantial part of the global soil carbon and nitrogen. However, global warming causes abrupt erosion and gradual thaw, which make these stocks vulnerable to microbial decomposition into greenhouse gases. Here, we investigated the microbial response to abrupt in situ permafrost thaw. We sequenced the total RNA of a 1 m deep soil core consisting of up to 26 500-year-old permafrost material from an active abrupt erosion site. We analysed the microbial community in the active layer soil, the recently thawed, and the intact permafrost, and found maximum RNA:DNA ratios in recently thawed permafrost indicating a high microbial activity. In thawed permafrost, potentially copiotrophic Burkholderiales and Sphingobacteriales, but also microbiome predators dominated the community. Overall, both thaw-dependent and long-term soil properties significantly correlated with changes in community composition, as did microbiome predator abundance. Bacterial predators were dominated in shallower depths by Myxococcota, while protozoa, especially Cercozoa and Ciliophora, almost tripled in relative abundance in thawed layers. Our findings highlight the ecological importance of a diverse interkingdom and active microbial community highly abundant in abruptly thawing permafrost, as well as predation as potential biological control mechanism.

Indexed as

MicrobiotaPermafrostBacteriaCarbonRNASoilSoil MicrobiologyCarbonRNASoilabrupt erosioncopiotrophicpermafrostprotozoatranscriptomics

Identifiers

PMID37796894
PMCPMC10599396
OpenAlexW4387362903

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.