Evidence map›Paper›PMID 37794186›Full record

ArticleNature2023

Plasma proteomic associations with genetics and health in the UK Biobank.

Benjamin B Sun, Joshua Chiou, Matthew Traylor, Christian Benner, Yi-Hsiang Hsu, Tom G Richardson, Praveen Surendran, Anubha Mahajan, Chloe Robins, Steven G Vasquez-Grinnell and 54 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,197 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,197citing papers in PubMed, 6 pooled it
417.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,197 citing papers in PubMed, 6 syntheses or guidelines pooled it, 1,308 citations in OpenAlex.

  1. Pooled it
  2. Proteome-wide Mendelian randomization identifies causal plasma proteins in frontotemporal dementia.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Pooled it
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  13. Smoking Interacts WithBiological psychiatry global open science · 2026
    Article
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  17. Genetic susceptibility, risk prediction, and druggable targets for oropharyngeal cancer: a UK Biobank study.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2026
    Article
  18. Article
  19. Article
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1,137 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

64 authors at 18 institutions in 7 countries.

Benjamin B SunTranslational Sciences, Research & Development, Biogen, Cambridge, MA, USA. bbsun92@outlook.com.ORCID 0000-0001-6347-2281
Joshua Chiou *Internal Medicine Research Unit, Worldwide Research, Development and Medical, Pfizer, Cambridge, MA, USA.ORCID 0000-0002-4618-0647
Matthew Traylor *Human Genetics Centre of Excellence, Novo Nordisk Research Centre Oxford, Oxford, UK.
Christian Benner *Genentech, San Francisco, CA, USA.
Yi-Hsiang Hsu *Amgen Research, Cambridge, MA, USA.
Tom G Richardson *Human Genetics Centre of Excellence, Novo Nordisk Research Centre Oxford, Oxford, UK.
Praveen Surendran *Genomic Sciences, GlaxoSmithKline, Stevenage, UK.
Anubha Mahajan *Genentech, San Francisco, CA, USA.ORCID 0000-0001-5585-3420
Chloe Robins *Genomic Sciences, GlaxoSmithKline, Collegeville, PA, USA.
Steven G Vasquez-Grinnell *Bristol Myers Squibb, Princeton, NJ, USA.
Liping Hou *Population Analytics, Janssen Research & Development, Spring House, PA, USA.
Erika M Kvikstad *Bristol Myers Squibb, Princeton, NJ, USA.
Oliver S BurrenCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Jonathan DavitteGenomic Sciences, GlaxoSmithKline, Collegeville, PA, USA.
Kyle L FerberBiostatistics, Research and Development, Biogen, Cambridge, MA, USA.
Christopher E GilliesRegeneron Genetics Center, Tarrytown, NY, USA.
Åsa K HedmanExternal Science and Innovation Target Sciences, Worldwide Research, Development and Medical, Pfizer, Stockholm, Sweden.
Sile HuHuman Genetics Centre of Excellence, Novo Nordisk Research Centre Oxford, Oxford, UK.
Tinchi LinAnalytics and Data Sciences, Biogen, Cambridge, MA, USA.ORCID 0000-0001-5098-6902
Rajesh MikkilineniData Science Institute, Takeda Development Center Americas, Cambridge, MA, USA.
Rion K PendergrassGenentech, San Francisco, CA, USA.
Corran PickeringUK Biobank, Stockport, UK.
Bram PrinsCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.
Denis BairdTranslational Sciences, Research & Development, Biogen, Cambridge, MA, USA.
Chia-Yen ChenTranslational Sciences, Research & Development, Biogen, Cambridge, MA, USA.
Lucas D WardAlnylam Human Genetics, Discovery & Translational Research, Alnylam Pharmaceuticals, Cambridge, MA, USA.ORCID 0000-0002-8017-809X
Aimee M DeatonAlnylam Human Genetics, Discovery & Translational Research, Alnylam Pharmaceuticals, Cambridge, MA, USA.ORCID 0000-0003-0365-3077
Samantha WelshUK Biobank, Stockport, UK.
Carissa M WillisAlnylam Human Genetics, Discovery & Translational Research, Alnylam Pharmaceuticals, Cambridge, MA, USA.
Nick LehnerInstitute of Computational Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Matthias ArnoldInstitute of Computational Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.ORCID 0000-0002-4666-0923
Maria A WörheideInstitute of Computational Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Karsten SuhreBioinformatics Core, Weill Cornell Medicine-Qatar, Doha, Qatar.ORCID 0000-0001-9638-3912
Gabi KastenmüllerInstitute of Computational Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany.
Anurag SethiCalico Life Sciences, San Francisco, CA, USA.ORCID 0000-0003-3295-3116
Madeleine CuleCalico Life Sciences, San Francisco, CA, USA.ORCID 0000-0002-7400-5643
Anil RajCalico Life Sciences, San Francisco, CA, USA.
Alnylam Human Genetics
AstraZeneca Genomics Initiative
Biogen Biobank Team
Bristol Myers Squibb
Genentech Human Genetics
GlaxoSmithKline Genomic Sciences
Pfizer Integrative Biology
Population Analytics of Janssen Data Sciences
Regeneron Genetics Center
Lucy Burkitt-GrayUK Biobank, Stockport, UK.
Eugene MelamudCalico Life Sciences, San Francisco, CA, USA.ORCID 0000-0002-5943-6189
Mary Helen BlackPopulation Analytics, Janssen Research & Development, Spring House, PA, USA.
Eric B FaumanInternal Medicine Research Unit, Worldwide Research, Development and Medical, Pfizer, Cambridge, MA, USA.ORCID 0000-0002-9739-0249
Joanna M M HowsonHuman Genetics Centre of Excellence, Novo Nordisk Research Centre Oxford, Oxford, UK.ORCID 0000-0001-7618-0050
Hyun Min KangRegeneron Genetics Center, Tarrytown, NY, USA.
Mark I McCarthyGenentech, San Francisco, CA, USA.
Paul NioiAlnylam Human Genetics, Discovery & Translational Research, Alnylam Pharmaceuticals, Cambridge, MA, USA.
Slavé PetrovskiCentre for Genomics Research, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, Cambridge, UK.ORCID 0000-0002-1527-961X
Robert A ScottGenomic Sciences, GlaxoSmithKline, Stevenage, UK.ORCID 0000-0003-3634-3016
Erin N SmithTakeda Development Center Americas, San Diego, CA, USA.
Sándor SzalmaTakeda Development Center Americas, San Diego, CA, USA.ORCID 0000-0001-7591-3902
Dawn M WaterworthImmunology, Janssen Research & Development, Spring House, PA, USA.ORCID 0000-0002-9226-1317
Lyndon J MitnaulRegeneron Genetics Center, Tarrytown, NY, USA.
Joseph D SzustakowskiBristol Myers Squibb, Princeton, NJ, USA.ORCID 0000-0001-7900-3973
Bradford W GibsonAmgen Research, Cambridge, MA, USA.ORCID 0000-0003-3745-1940
Melissa R MillerInternal Medicine Research Unit, Worldwide Research, Development and Medical, Pfizer, Cambridge, MA, USA.
Christopher D WhelanTranslational Sciences, Research & Development, Biogen, Cambridge, MA, USA. christopherdwhelan@outlook.com.ORCID 0000-0003-0308-5583
Biogen (United States) · USRegeneron (United States) · USAlnylam Pharmaceuticals (United States) · USAstraZeneca (United Kingdom) · GBBristol-Myers Squibb (United States) · USEnzo Life Sciences (United States) · USNovo Nordisk (United Kingdom) · GBPfizer (United States) · USTakeda (United States) · USAmgen (United States) · USGlaxoSmithKline (United Kingdom) · GBHelmholtz Zentrum München · DEJanssen (United States) · USUK Biobank · GBGlaxoSmithKline (United States) · USDuke University · USPfizer (Sweden) · SEWeill Cornell Medical College in Qatar · QA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Pharma Proteomics Project is a precompetitive biopharmaceutical consortium characterizing the plasma proteomic profiles of 54,219 UK Biobank participants. Here we provide a detailed summary of this initiative, including technical and biological validations, insights into proteomic disease signatures, and prediction modelling for various demographic and health indicators. We present comprehensive protein quantitative trait locus (pQTL) mapping of 2,923 proteins that identifies 14,287 primary genetic associations, of which 81% are previously undescribed, alongside ancestry-specific pQTL mapping in non-European individuals. The study provides an updated characterization of the genetic architecture of the plasma proteome, contextualized with projected pQTL discovery rates as sample sizes and proteomic assay coverages increase over time. We offer extensive insights into trans pQTLs across multiple biological domains, highlight genetic influences on ligand-receptor interactions and pathway perturbations across a diverse collection of cytokines and complement networks, and illustrate long-range epistatic effects of ABO blood group and FUT2 secretor status on proteins with gastrointestinal tissue-enriched expression. We demonstrate the utility of these data for drug discovery by extending the genetic proxied effects of protein targets, such as PCSK9, on additional endpoints, and disentangle specific genes and proteins perturbed at loci associated with COVID-19 susceptibility. This public-private partnership provides the scientific community with an open-access proteomics resource of considerable breadth and depth to help to elucidate the biological mechanisms underlying proteo-genomic discoveries and accelerate the development of biomarkers, predictive models and therapeutics

Indexed as

Biological Specimen BanksBlood ProteinsDatabases, FactualGenomicsHealthProteomeProteomicsABO Blood-Group SystemCOVID-19Drug DiscoveryEpistasis, GeneticFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferaseGenetic Predisposition to DiseaseHumansPlasmaABO Blood-Group SystemBlood ProteinsFucosyltransferasesGalactoside 2-alpha-L-fucosyltransferasePCSK9 protein, humanProprotein Convertase 9Proteome

Identifiers

PMID37794186
PMCPMC10567551
OpenAlexW4387344289

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.