Evidence map›Paper›PMID 37794162›Full record

ArticleCommunications biology2023

Physiological ER stress caused by amylase production induces regulated Ire1-dependent mRNA decay in Aspergillus oryzae.

Mizuki Tanaka, Silai Zhang, Shun Sato, Jun-Ichi Yokota, Yuko Sugiyama, Yasuaki Kawarasaki, Youhei Yamagata, Katsuya Gomi, Takahiro Shintani

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mizuki TanakaDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, 183-8509, Japan. mizuki-tanaka@go.tuat.ac.jp.ORCID http://orcid.org/0000-0002-6302-323X
Silai ZhangDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Shun SatoDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Jun-Ichi YokotaDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Yuko SugiyamaDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan.
Yasuaki KawarasakiBiomolecular Engineering Laboratory, School of Food and Nutritional Science, University of Shizuoka, Shizuoka, 422-8526, Japan.
Youhei YamagataDepartment of Applied Biological Chemistry, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, 183-8509, Japan.
Katsuya GomiDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan. katsuya.gomi.a6@tohoku.ac.jp.ORCID http://orcid.org/0000-0003-3463-8072
Takahiro ShintaniDepartment of Agricultural Chemistry, Graduate School of Agricultural Science, Tohoku University, Sendai, 980-8572, Japan. takahiro.shintani.d7@tohoku.ac.jp.ORCID http://orcid.org/0000-0001-6630-5892
Tohoku University · JPTokyo University of Agriculture and Technology · JPUniversity of Shizuoka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulated Ire1-dependent decay (RIDD) is a feedback mechanism in which the endoribonuclease Ire1 cleaves endoplasmic reticulum (ER)-localized mRNAs encoding secretory and membrane proteins in eukaryotic cells under ER stress. RIDD is artificially induced by chemicals that generate ER stress; however, its importance under physiological conditions remains unclear. Here, we demonstrate the occurrence of RIDD in filamentous fungus using Aspergillus oryzae as a model, which secretes copious amounts of amylases. α-Amylase mRNA was rapidly degraded by IreA, an Ire1 ortholog, depending on its ER-associated translation when mycelia were treated with dithiothreitol, an ER-stress inducer. The mRNA encoding maltose permease MalP, a prerequisite for the induction of amylolytic genes, was also identified as an RIDD target. Importantly, RIDD of malP mRNA is triggered by inducing amylase production without any artificial ER stress inducer. Our data provide the evidence that RIDD occurs in eukaryotic microorganisms under physiological ER stress.

Indexed as

AmylasesAspergillus oryzaeEndoplasmic Reticulum StressRNA, MessengerRNA StabilityAmylasesRNA, Messenger

Identifiers

PMID37794162
PMCPMC10551036
OpenAlexW4387331659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.