Evidence map›Paper›PMID 37793076›Full record

ArticleACS synthetic biology2023

Molecular Imaging with Aquaporin-Based Reporter Genes: Quantitative Considerations from Monte Carlo Diffusion Simulations.

Rochishnu Chowdhury, Jinyang Wan, Remy Gardier, Jonathan Rafael-Patino, Jean-Philippe Thiran, Frederic Gibou, Arnab Mukherjee

Open access · greenAbstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A programmable genetic platform for engineering noninvasive biosensors.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Rochishnu Chowdhury
Jinyang Wan
Remy GardierSignal Processing Laboratory (LTS5), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
Jonathan Rafael-PatinoSignal Processing Laboratory (LTS5), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
Jean-Philippe ThiranSignal Processing Laboratory (LTS5), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
Frederic Gibou
University of California, Santa Barbara · USUniversity Hospital of Lausanne · CHÉcole Polytechnique Fédérale de Lausanne · CH

Funding

Metal-free, genetically encoded reporters for calcium recording with MRIR01NS128278 · NINDS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI Tod Edward Kippin, Arnab Mukherjee · 2023 to 2026
$1.9M
Engineering fluorescence and magnetic resonance reporter genes for imaging biological function in hypoxic cells and in vivoR35GM133530 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI MUKHERJEE, ARNAB · 2019 to 2023
$1.6M
Engineering a calcium reporter gene for magnetic resonance imaging of neural activityR21EB033989 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI MUKHERJEE, ARNAB · 2022 to 2023
$425k
A genetically encoded MRI reporter for noninvasive imaging of activity-dependent gene expression in neuronsR03DA050971 · NIDA · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI MUKHERJEE, ARNAB · 2021 to 2021
$218k
NIBIB NIH HHS R21 EB033989NIDA NIH HHS R03 DA050971NIGMS NIH HHS R35 GM133530NINDS NIH HHS R01 NS128278
6 · The paper itself

Abstract

Aquaporins provide a unique approach for imaging genetic activity in deep tissues by increasing the rate of cellular water diffusion, which generates a magnetic resonance contrast. However, distinguishing aquaporin signals from the tissue background is challenging because water diffusion is influenced by structural factors, such as cell size and packing density. Here, we developed a Monte Carlo model to analyze how cell radius and intracellular volume fraction quantitatively affect aquaporin signals. We demonstrated that a differential imaging approach based on subtracting signals at two diffusion times can improve specificity by unambiguously isolating aquaporin signals from the tissue background. We further used Monte Carlo simulations to analyze the connection between diffusivity and the percentage of cells engineered to express aquaporin and established a mapping that accurately determined the volume fraction of aquaporin-expressing cells in mixed populations. The quantitative framework developed in this study will enable a broad range of applications in biomedical synthetic biology, requiring the use of aquaporins to noninvasively monitor the location and function of genetically engineered devices in live animals.

Indexed as

AquaporinsDiffusion Magnetic Resonance ImagingAnimalsComputer SimulationDiffusionGenes, ReporterMolecular ImagingMonte Carlo MethodWaterAquaporinsWateraquaporinsdiffusion-weighted imagingMonte Carlo diffusion simulationsMRIreporter genestissue microstructure

Identifiers

PMID37793076
PMCPMC11604347
OpenAlexW4387344737

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.