Evidence map›Paper›PMID 37791581›Full record

ArticleEMBO molecular medicine2023

Single-cell profiling and zebrafish avatars reveal LGALS1 as immunomodulating target in glioblastoma.

Lise Finotto, Basiel Cole, Wolfgang Giese, Elisabeth Baumann, Annelies Claeys, Maxime Vanmechelen, Brecht Decraene, Marleen Derweduwe, Nikolina Dubroja Lakic, Gautam Shankar and 12 more

Open access · goldAbstract read
In one paragraph

Article in EMBO molecular medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Zebrafish as a Model for Translational Immuno-Oncology.Journal of personalized medicine · 2025
    Review
  7. Article
  8. Small Fish, Big Answers: Zebrafish and the Molecular Drivers of Metastasis.International journal of molecular sciences · 2025
    Review
  9. Review
  10. Article
  11. Article
  12. The Role of the Neurotrophin Network in Skin Squamous Cell Cancer and the Novel Use of the Zebrafish System.JID innovations : skin science from molecules to population health · 2024
    Review
  13. Article
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 3 countries.

Lise FinottoMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID 0000-0002-4695-9343
Basiel ColeThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.ORCID 0000-0001-5899-5598
Wolfgang GieseMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID 0000-0003-0872-0929
Elisabeth BaumannMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID 0000-0002-7804-4885
Annelies ClaeysThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.
Maxime VanmechelenThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-8342-3150
Brecht DecraeneThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-2523-452X
Marleen DerweduweThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-4960-4847
Nikolina Dubroja LakicThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.
Gautam ShankarThe Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.
Madhu Nagathihalli KantharajuMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Jan Philipp AlbrechtMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Ilse GeudensVIB - KU Leuven Center for Cancer Biology, VIB - KU Leuven, Leuven, Belgium.ORCID 0000-0003-3297-4208
Fabio StanchiVIB - KU Leuven Center for Cancer Biology, VIB - KU Leuven, Leuven, Belgium.ORCID 0000-0003-3393-2472
Keith L LigonCenter for Neuro-oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID 0000-0002-7733-600X
Bram BoeckxVIB - KU Leuven Center for Cancer Biology, VIB - KU Leuven, Leuven, Belgium.ORCID 0000-0002-0296-6680
Diether LambrechtsVIB - KU Leuven Center for Cancer Biology, VIB - KU Leuven, Leuven, Belgium.ORCID 0000-0002-3429-302X
Kyle HarringtonMax Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID 0000-0002-7237-1973
Ludo Van Den BoschLaboratory of Neurobiology, Department of Neurosciences, Experimental Neurology & Leuven Brain Institute (LBI), KU Leuven, Leuven, Belgium.ORCID 0000-0003-0104-4067
Steven De VleeschouwerKU Leuven Institute for Single Cell Omics (LISCO), KU Leuven, Leuven, Belgium.ORCID 0000-0002-9576-9917
Frederik De Smet *The Laboratory for Precision Cancer Medicine, Translational Cell and Tissue Research Unit, Department of Imaging & Pathology, KU Leuven, Leuven, Belgium.ORCID 0000-0002-6669-3335
Holger Gerhardt *Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID 0000-0002-3030-0384
VIB-KU Leuven Center for Cancer Biology · BEMax Delbrück Center · DEAllen Institute for Brain Science · USBrigham and Women's Hospital · USVIB-KU Leuven Center for Brain & Disease Research · BE

Funding

Targeting the Vasular SystemP50CA165962 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI Benjamin Harris Kann · 2013 to 2026
$33.5M
Genetic evolution of glioblastomas during radiation and temozolomide therapyR01CA188228 · NCI · DANA-FARBER CANCER INST · PI BEROUKHIM, RAMEEN, CHAKRAVARTI, ARNAB · 2015 to 2025
$6.9M
Synthetic lethalities to cell cycle disruption in gliomaR01CA262462 · NCI · DANA-FARBER CANCER INST · PI RAMEEN BEROUKHIM, KEITH LLOYD LIGON · 2022 to 2026
$3.3M
MYB family alterations in pediatric gliomasR01CA215489 · NCI · DANA-FARBER CANCER INST · PI BEROUKHIM, RAMEEN, LIGON, KEITH LLOYD · 2017 to 2021
$2.8M
Characterizing TP53 and PPM1D mutations as resistance drivers to radiation therapy in Diffuse Intrinsic Pontine GliomasR01CA219943 · NCI · BROAD INSTITUTE, INC. · PI BEROUKHIM, RAMEEN, LIGON, KEITH LLOYD · 2017 to 2021
$2.5M
NCI NIH HHS P50 CA165962NCI NIH HHS R01 CA188228NCI NIH HHS R01 CA215489NCI NIH HHS R01 CA219943NCI NIH HHS R01 CA262462
6 · The paper itself

Abstract

Glioblastoma (GBM) remains the most malignant primary brain tumor, with a median survival rarely exceeding 2 years. Tumor heterogeneity and an immunosuppressive microenvironment are key factors contributing to the poor response rates of current therapeutic approaches. GBM-associated macrophages (GAMs) often exhibit immunosuppressive features that promote tumor progression. However, their dynamic interactions with GBM tumor cells remain poorly understood. Here, we used patient-derived GBM stem cell cultures and combined single-cell RNA sequencing of GAM-GBM co-cultures and real-time in vivo monitoring of GAM-GBM interactions in orthotopic zebrafish xenograft models to provide insight into the cellular, molecular, and spatial heterogeneity. Our analyses revealed substantial heterogeneity across GBM patients in GBM-induced GAM polarization and the ability to attract and activate GAMs-features that correlated with patient survival. Differential gene expression analysis, immunohistochemistry on original tumor samples, and knock-out experiments in zebrafish subsequently identified LGALS1 as a primary regulator of immunosuppression. Overall, our work highlights that GAM-GBM interactions can be studied in a clinically relevant way using co-cultures and avatar models, while offering new opportunities to identify promising immune-modulating targets.

Indexed as

Brain NeoplasmsGlioblastomaAnimalsCell Line, TumorGalectin 1HumansMacrophagesTumor MicroenvironmentZebrafishGalectin 1LGALS1 protein, humanglioblastomaLGALS1macrophagesscRNA-seqzebrafish avatars

Identifiers

PMID37791581
PMCPMC10630887
OpenAlexW4387326522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.