Evidence map›Paper›PMID 37791364›Full record

ArticleJournal of applied crystallography2023

Explainable machine learning for diffraction patterns.

Shah Nawaz, Vahid Rahmani, David Pennicard, Shabarish Pala Ramakantha Setty, Barbara Klaudel, Heinz Graafsma

Open access · hybridAbstract read
In one paragraph

Article in Journal of applied crystallography, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Machine learning for the classification of serial electron diffraction patterns: synthetic data.Acta crystallographica. Section A, Foundations and advances · 2025
    Article
  4. Article
  5. Article
  6. Introduction to the virtual collection of papers onJournal of applied crystallography · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Shah NawazDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany.
Vahid RahmaniDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany.
David PennicardDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany.
Shabarish Pala Ramakantha SettyDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany.
Barbara KlaudelGdańsk University of Technology, Gdańsk, Poland.
Heinz GraafsmaDeutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0003-2304-667X
Deutsches Elektronen-Synchrotron DESY · DEGdańsk University of Technology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serial crystallography experiments at X-ray free-electron laser facilities produce massive amounts of data but only a fraction of these data are useful for downstream analysis. Thus, it is essential to differentiate between acceptable and unacceptable data, generally known as 'hit' and 'miss', respectively. Image classification methods from artificial intelligence, or more specifically convolutional neural networks (CNNs), classify the data into hit and miss categories in order to achieve data reduction. The quantitative performance established in previous work indicates that CNNs successfully classify serial crystallography data into desired categories [Ke, Brewster, Yu, Ushizima, Yang & Sauter (2018).

Indexed as

explainable machine learningGrad-CAMgradient-weighted class activation mappingvisualization of representations

Identifiers

PMID37791364
PMCPMC10543671
OpenAlexW4386886078

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.