Evidence map›Paper›PMID 37789465›Full record

ArticleMolecular horticulture2022

The SlSHN2 transcription factor contributes to cuticle formation and epidermal patterning in tomato fruit.

Cécile Bres, Johann Petit, Nicolas Reynoud, Lysiane Brocard, Didier Marion, Marc Lahaye, Bénédicte Bakan, Christophe Rothan

Open access · diamondAbstract read
In one paragraph

Article in Molecular horticulture, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

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  10. Dissection of mRNA acMolecular horticulture · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Cécile Bres *UMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Johann Petit *UMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France.
Nicolas ReynoudUnité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France.
Lysiane BrocardUniv. Bordeaux, CNRS, INSERM, Bordeaux Imaging Center, BIC, UMS 3420, US 4, 33000, Bordeaux, France.
Didier MarionUnité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France.
Marc LahayeUnité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France.
Bénédicte BakanUnité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France.
Christophe RothanUMR 1332 BFP, INRAE, Université de Bordeaux, 33140, Villenave d'Ornon, France. christophe.rothan@inrae.fr.ORCID http://orcid.org/0000-0002-6831-2823
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversité de Bordeaux · FRCentre National de la Recherche Scientifique · FR

Funding

Agence Nationale de la Recherche ANR-13-BSV-0012
6 · The paper itself

Abstract

Tomato (Solanum lycopersicum) is an established model for studying plant cuticle because of its thick cuticle covering and embedding the epidermal cells of the fruit. In this study, we screened an EMS mutant collection of the miniature tomato cultivar Micro-Tom for fruit cracking mutants and found a mutant displaying a glossy fruit phenotype. By using an established mapping-by-sequencing strategy, we identified the causal mutation in the SlSHN2 transcription factor that is specifically expressed in outer epidermis of growing fruit. The point mutation in the shn2 mutant introduces a K to N amino acid change in the highly conserved 'mm' domain of SHN proteins. The cuticle from shn2 fruit showed a ~ fivefold reduction in cutin while abundance and composition of waxes were barely affected. In addition to alterations in cuticle thickness and properties, epidermal patterning and polysaccharide composition of the cuticle were changed. RNAseq analysis further highlighted the altered expression of hundreds of genes in the fruit exocarp of shn2, including genes associated with cuticle and cell wall formation, hormone signaling and response, and transcriptional regulation. In conclusion, we showed that a point mutation in the transcriptional regulator SlSHN2 causes major changes in fruit cuticle formation and its coordination with epidermal patterning.

Indexed as

Cell wallCuticleEpidermisEthyleneMutantSHINE

Identifiers

PMID37789465
PMCPMC10515250
OpenAlexW4281680561

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.