ArticleMolecular horticulture2023
Telomere-to-telomere and haplotype-resolved genome of the kiwifruit Actinidia eriantha.
Article in Molecular horticulture, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Chromosome-level haplotype-resolved genome assembly of kiwifruit (Actinidia eriantha).Scientific data · 2026Article
- Kiwifruit genomics and applications: recent advances, current challenges, and future prospects.Horticulture research · 2026Article
- Allelic structural variation at the NLR25-1 locus enhances defense against Pseudomonas syringae in kiwifruit.Genome biology · 2026Article
- Haplotype-resolved genome assembly provides insights into the evolutionary origin of waterlogging-tolerantHorticulture research · 2026Article
- The Neijiang pig T2T genome reveals domestication history and germplasm traits of Southwest Chinese local breeds.Communications biology · 2026Article
- Improved Visualization Method of DNA Sequences and its Application in Phylogenetic Analysis.Combinatorial chemistry & high throughput screening · 2026Article
- From genomics to horticultural innovation: botanical traits, bioactive compounds, and sustainable utilization of kiwifruit (Frontiers in plant science · 2026Review
- Comprehensive Identification and Expression Analysis of thePlants (Basel, Switzerland) · 2025Article
- CRISPR/Cas9-mediated editing of carotenoid biosynthesis genes alters carotenoid concentrations in kiwifruit.BMC plant biology · 2025Article
- A chromosome-level genome assembly of Guimi No. 2 (Actinidia chinensis).Scientific data · 2025Article
- Construction of the super pan-genome for the genusHorticulture research · 2025Article
- Haplotype-resolved genome reveals haplotypic variation and the biosynthesis of medicinal ingredients in Areca catechu L.Molecular horticulture · 2025Article
- Chromosome-level genome assembly assisting for dissecting mechanism of anthocyanin regulation in kiwifruit (Actinidia arguta).Molecular horticulture · 2025Article
- tidk: a toolkit to rapidly identify telomeric repeats from genomic datasets.Bioinformatics (Oxford, England) · 2025Article
- Super pan-genome reveals extensive genomic variations associated with phenotypic divergence in Actinidia.Molecular horticulture · 2025Article
- Advances in Whole Genome Sequencing: Methods, Tools, and Applications in Population Genomics.International journal of molecular sciences · 2025Review
- Graph-Based Pangenome of Actinidia chinensis Reveals Structural Variations Mediating Fruit Degreening.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024Article
- Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits.Plant communications · 2024Article
- Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid.Molecular horticulture · 2024Article
- quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification.Horticulture research · 2023Article
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10 authors.
Funding
Abstract
Actinidia eriantha is a characteristic fruit tree featuring with great potential for its abundant vitamin C and strong disease resistance. It has been used in a wide range of breeding programs and functional genomics studies. Previously published genome assemblies of A. eriantha are quite fragmented and not highly contiguous. Using multiple sequencing strategies, we get the haplotype-resolved and gap-free genomes of an elite breeding line "Midao 31" (MD), termed MDHAPA and MDHAPB. The new assemblies anchored to 29 pseudochromosome pairs with a length of 619.3 Mb and 611.7 Mb, as well as resolved 27 and 28 gap-close chromosomes in a telomere-to-telomere (T2T) manner. Based on the haplotype-resolved genome, we found that most alleles experienced purifying selection and coordinately expressed. Owing to the high continuity of assemblies, we defined the centromeric regions of A. eriantha, and identified the major repeating monomer, which is designated as Ae-CEN153. This resource lays a solid foundation for further functional genomics study and horticultural traits improvement in kiwifruit.
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