ArticleMolecular horticulture2022
Resequencing and genome-wide association studies of autotetraploid potato.
Article in Molecular horticulture, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Beyond Starch: Towards a Scalable Potato Platform for Molecular Farming.Plant biotechnology journal · 2026Review
- Population genomic analysis and genome-wide association mapping of leaf morphology in Phyllanthus emblica L.BMC plant biology · 2026Article
- Genome-wide association studies in horticultural crops: decoding genetic diversity for precision breeding.Horticulture research · 2026Article
- StSP6A: a key regulator integrating multiple signals for potato tuber formation.Plant cell reports · 2026Review
- Polymorphisms and Expression Characteristics of theAnimals : an open access journal from MDPI · 2026Article
- Human selection maintains karyotype integrity of highly unstable genomic cultivated autotetraploid potato (Science advances · 2025Article
- Genotypic Diversity and Genome-Wide Association Study of Protein Content and Amino Acid Profile in Diverse Potato Accessions.Foods (Basel, Switzerland) · 2025Article
- Haplotype-resolved genome assembly and genome-wide association study identifies the candidate gene closely related to sugar content and tuber yield inHorticulture research · 2025Article
- Genome-wide association study identifies candidate genes for glycoalkaloid biosynthesis in tetraploid potato (Solanum tuberosum L.) tubers.BMC plant biology · 2025Article
- Chromosome-level genome assembly assisting for dissecting mechanism of anthocyanin regulation in kiwifruit (Actinidia arguta).Molecular horticulture · 2025Article
- Regulation of storage organ formation by long-distance tuberigen signals in potato.Horticulture research · 2025Article
- Potato steroidal glycoalkaloids: properties, biosynthesis, regulation and genetic manipulation.Molecular horticulture · 2024Review
- Genetic Diversity and Genome-Wide Association Study of Total Phenolics, Flavonoids, and Antioxidant Properties in Potatoes (International journal of molecular sciences · 2024Article
- QTL discovery for agronomic and quality traits in diploid potato clones using PotatoMASH amplicon sequencing.G3 (Bethesda, Md.) · 2024Article
- Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus.Scientific data · 2024Article
- Potato: from functional genomics to genetic improvement.Molecular horticulture · 2024Review
- Genotyping-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- New Frontiers in Potato Breeding: Tinkering with Reproductive Genes and Apomixis.Biomolecules · 2024Review
- Genetic Basis of Potato Tuber Defects and Identification of Heat-Tolerant Clones.Plants (Basel, Switzerland) · 2024Article
- Revitalizing agriculture: next-generation genotyping and -omics technologies enabling molecular prediction of resilient traits in the Solanaceae family.Frontiers in plant science · 2024Review
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Authors and funding
5 authors.
Funding
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Abstract
Potato is the fourth most important food crop in the world. Although with a long history for breeding approaches, genomic information and association between genes and agronomic traits remain largely unknown particularly in autotetraploid potato cultivars, which limit the molecular breeding progression. By resequencing the genome of 108 main cultivar potato accessions with rich genetic diversity and population structure from International Potato Center, with approximate 20-fold coverage, we revealed more than 27 million Single Nucleotide Polymorphisms and ~ 3 million Insertion and Deletions with high quality and accuracy. Domestication analysis and genome-wide association studies (GWAS) identified candidate loci related to photoperiodic flowering time and temperature sensitivity as well as disease resistance, providing informative insights into the selection and domestication of cultivar potato. In addition, GWAS with GWASploy for 25 agronomic traits identified candidate loci by association signals, especially those related to tuber size, small-sized tuber weight and tuber thickness that was also validated by transcriptome analysis. Our study provides a valuable resource that facilitates the elucidation of domestication process as well as the genetic studies and agronomic improvement of autotetraploid potato.
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