Evidence map›Paper›PMID 37786681›Full record

ArticlebioRxiv : the preprint server for biology2023

Structure of RADX and mechanism for regulation of RAD51 nucleofilaments.

Swati Balakrishnan, Madison Adolph, Miaw-Sheue Tsai, Kaitlyn Gallagher, David Cortez, Walter J Chazin

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Swati BalakrishnanCenter for Structural Biology, Vanderbilt University, Nashville, TN 37240, USA.
Madison AdolphDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37237, USA.
Miaw-Sheue TsaiBiological Systems and Bioengineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Kaitlyn GallagherCenter for Structural Biology, Vanderbilt University, Nashville, TN 37240, USA.
David CortezDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37237, USA.
Walter J ChazinCenter for Structural Biology, Vanderbilt University, Nashville, TN 37240, USA.
Vanderbilt University · USLawrence Berkeley National Laboratory · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Analysis of the Replication Stress ResponseR01GM116616 · NIGMS · VANDERBILT UNIVERSITY · PI David K Cortez · 2015 to 2026
$5.4M
Structural Biology of Multi-Domain Proteins and Multi-Protein Machinery in DNA Replication and RepairR35GM118089 · NIGMS · VANDERBILT UNIVERSITY · PI WALTER J. CHAZIN · 2016 to 2026
$4.9M
Thermo Scientific Glacios cryo-TEMS10OD030292 · OD · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2021 to 2021
$2.0M
NCI NIH HHS P01 CA092584NIGMS NIH HHS R01 GM116616NIGMS NIH HHS R35 GM118089NIH HHS S10 OD030292
6 · The paper itself

Abstract

Replication fork reversal is a fundamental process required for resolution of encounters with DNA damage. A key step in the stabilization and eventual resolution of reversed forks is formation of RAD51 nucleoprotein filaments on exposed ssDNA. To avoid genome instability, RAD51 filaments are tightly controlled by a variety of positive and negative regulators. RADX is a recently discovered negative regulator that binds tightly to ssDNA, directly interacts with RAD51, and regulates replication fork reversal and stabilization in a context-dependent manner. Here we present a structure-based investigation of RADX's mechanism of action. Mass photometry experiments showed that RADX forms multiple oligomeric states in a concentration dependent manner, with a predominance of trimers in the presence of ssDNA. The structure of RADX, which has no structurally characterized orthologs, was determined

Indexed as

Biological SciencesBiophysics and Computational Biologycryo-EMDNA replicationRAD51replication fork

Identifiers

PMID37786681
PMCPMC10541619
OpenAlexW4386933953

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.