Evidence map›Paper›PMID 37783880›Full record

ArticleScientific reports2023

ESX1 gene as a potential candidate responsible for male infertility in nonobstructive azoospermia.

Agnieszka Malcher, Zuzanna Graczyk, Hermann Bauer, Tomasz Stokowy, Andrea Berman, Mikołaj Smolibowski, Dominika Blaszczyk, Piotr Jedrzejczak, Alexander N Yatsenko, Maciej Kurpisz

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Agnieszka MalcherInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland. agnieszka.malcher@igcz.poznan.pl.
Zuzanna GraczykInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland.
Hermann BauerDepartment of Developmental Genetics, Max Planck Institute for Molecular Genetics, Berlin, Germany.
Tomasz StokowyIT Division, University of Bergen, Bergen, Norway.
Andrea BermanDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, USA.
Mikołaj SmolibowskiInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland.
Dominika BlaszczykInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland.
Piotr JedrzejczakDepartment of Cell Biology, Center of Obstetrics, Gynecology and Infertility Treatment, University of Medical Sciences, Poznan, Poland.
Alexander N YatsenkoDepartment of OB/GYN and Reproductive Sciences, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Maciej KurpiszInstitute of Human Genetics, Polish Academy of Sciences, Poznan, Poland. maciej.kurpisz@igcz.poznan.pl.
Polish Academy of Sciences · PLUniversity of Pittsburgh · USInstitute of Human Genetics · PLMax Planck Institute for Molecular Genetics · DEPoznan University of Medical Sciences · PLUniversity of Bergen · NO

Funding

Project IIIP50HD096723 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Kyle Edwin Orwig · 2019 to 2026
$15.0M
NICHD NIH HHS P50 HD096723
6 · The paper itself

Abstract

Infertility is a problem that affects approximately 15% of couples, and male infertility is responsible for 40-50% of these cases. The cause of male infertility is still poorly diagnosed and treated. One of the prominent causes of male infertility is disturbed spermatogenesis, which can lead to nonobstructive azoospermia (NOA). Whole-genome sequencing (WGS) allows us to identify novel rare variants in potentially NOA-associated genes, among others, in the ESX1 gene. The aim of this study was to activate the ESX1 gene using CRISPRa technology in human germ cells (testicular seminoma cells-TCam-2). Successful activation of the ESX1 gene in TCam-2 cells using the CRISPRa system was achieved, and the expression level of the ESX1 gene was significantly higher in modified TCam-2 cells than in WT cells or the negative control with nontargeted gRNA (p < 0.01). Using RNA-seq, a network of over 50 genes potentially regulated by the ESX1 gene was determined. Finally, 6 genes, NANOG, CXCR4, RPS6KA5, CCND1, PDE1C, and LINC00662, participating in cell proliferation and differentiation were verified in azoospermic patients with and without a mutation in the ESX1 gene as well as in men with normal spermatogenesis, where inverse correlations in the expression levels of the observed genes were noted.

Indexed as

AzoospermiaInfertility, MaleHumansMaleMutationSpermatogenesisTestis

Identifiers

PMID37783880
PMCPMC10545701
OpenAlexW4387245968

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.