Evidence map›Paper›PMID 37781628›Full record

ArticlebioRxiv : the preprint server for biology2023

Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components.

Changhai Duan, Yang Liu, Ying Liu, Lirui Liu, Mingwei Cai, Rui Zhang, Qinglu Zeng, Eugene V Koonin, Mart Krupovic, Meng Li

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Changhai DuanSZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, 518060 Shenzhen, China.
Yang LiuArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060 Shenzhen, China.
Ying LiuInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, 75015 Paris, France.
Lirui LiuArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060 Shenzhen, China.
Mingwei CaiArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060 Shenzhen, China.
Rui ZhangArchaeal Biology Center, Institute for Advanced Study, Shenzhen University, 518060 Shenzhen, China.
Qinglu ZengDepartment of Ocean Science, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA.
Mart KrupovicInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Archaeal Virology Unit, 75015 Paris, France.
Meng LiSZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, 518060 Shenzhen, China.
Shenzhen University · CNCentre National de la Recherche Scientifique · FRHong Kong University of Science and Technology · HKNational Center for Biotechnology Information · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bathyarchaeia represent a class of archaea common and abundant in sedimentary ecosystems. The virome of Bathyarchaeia so far has not been characterized. Here we report 56 metagenome-assembled genomes of Bathyarchaeia viruses identified in metagenomes from different environments. Gene sharing network and phylogenomic analyses led to the proposal of four virus families, including viruses of the realms

Indexed as

BathyarchaeiaCas4 proteintype IV-B CRISPR-Cas systemvirus

Identifiers

PMID37781628
PMCPMC10541130
OpenAlexW4386165917

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.