Evidence map›Paper›PMID 37780458›Full record

ArticleFrontiers in neuroinformatics2023

PyDapsys: an open-source library for accessing electrophysiology data recorded with DAPSYS.

Peter Konradi, Alina Troglio, Ariadna Pérez Garriga, Aarón Pérez Martín, Rainer Röhrig, Barbara Namer, Ekaterina Kutafina

Abstract read
In one paragraph

Article in Frontiers in neuroinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Peter KonradiInstitute of Medical Informatics, Medical Faculty, RWTH Aachen University, Aachen, Germany.
Alina TroglioResearch Group Neuroscience, IZKF, RWTH Aachen, Aachen, Germany.
Ariadna Pérez GarrigaInstitute of Medical Informatics, Medical Faculty, RWTH Aachen University, Aachen, Germany.
Aarón Pérez MartínSimulation and Data Lab Neuroscience, Jülich Supercomputing Centre (JSC), Institute for Advanced Simulation, JARA, Forschungszentrum Jülich GmbH, Jülich, Germany.
Rainer RöhrigInstitute of Medical Informatics, Medical Faculty, RWTH Aachen University, Aachen, Germany.
Barbara NamerResearch Group Neuroscience, IZKF, RWTH Aachen, Aachen, Germany.
Ekaterina KutafinaInstitute of Medical Informatics, Medical Faculty, RWTH Aachen University, Aachen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the field of neuroscience, a considerable number of commercial data acquisition and processing solutions rely on proprietary formats for data storage. This often leads to data being locked up in formats that are only accessible by using the original software, which may lead to interoperability problems. In fact, even the loss of data access is possible if the software becomes unsupported, changed, or otherwise unavailable. To ensure FAIR data management, strategies should be established to enable long-term, independent, and unified access to data in proprietary formats. In this work, we demonstrate PyDapsys, a solution to gain open access to data that was acquired using the proprietary recording system DAPSYS. PyDapsys enables us to open the recorded files directly in Python and saves them as NIX files, commonly used for open research in the electrophysiology domain. Thus, PyDapsys secures efficient and open access to existing and prospective data. The manuscript demonstrates the complete process of reverse engineering a proprietary electrophysiological format on the example of microneurography data collected for studies on pain and itch signaling in peripheral neural fibers.

Indexed as

data management toolselectrophysiologyFAIRinteroperabilitymicroneurographyopen datapainreverse-engineered

Identifiers

PMID37780458
PMCPMC10539619

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.