ArticleMicrobiome2023
Host genetic variation drives the differentiation in the ecological role of the native Miscanthus root-associated microbiome.
Article in Microbiome, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed, 38 citations in OpenAlex.
- Consistent root microbiomes across contrasting habitats in a wild perennial vine.Plant biology (Stuttgart, Germany) · 2026Article
- Linking Host Provenance, Microbial Assembly, and Environmental Legacy Effects in the Root-Associated Microbiome ofMicroorganisms · 2026Article
- Insights into the role of dopamine in rhizosphere microbiome assembly.Nature communications · 2026Article
- Distinct rhizosphere microbiomes and metabolomes mediate Fusarium crown rot resistance across wheat cultivars.NPJ biofilms and microbiomes · 2026Article
- The native soil microbiome is critical for early root-associated microbiota assembly and canola growth.Environmental microbiome · 2025Article
- The Role of Coffee Microbiomes in Pathogen Resistance Across Varieties and Ecological Niches.Microorganisms · 2025Article
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- Altered rhizosphere microbiome composition associated with B-subgenome cultivars of diploid and triploid banana plants.The ISME journal · 2025Article
- DNA metabarcode analyses reveal similarities and differences in plant microbiomes of industrial hemp and medicinalFrontiers in microbiology · 2025Article
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- Community standards and future opportunities for synthetic communities in plant-microbiota research.Nature microbiology · 2024Review
- Fine-scale characterization of the soybean rhizosphere microbiome via synthetic long reads and avidity sequencing.Environmental microbiome · 2024Article
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- The rhizosphere and root selections intensify fungi-bacteria interaction in abiotic stress-resistant plants.PeerJ · 2024Article
- Root-associated microbial diversity and metabolomics in maize resistance to stalk rot.Frontiers in microbiology · 2024Article
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMicrobiome recruitment is influenced by plant host, but how host plant impacts the assembly, functions, and interactions of perennial plant root microbiomes is poorly understood. Here we examined prokaryotic and fungal communities between rhizosphere soils and the root endophytic compartment in two native Miscanthus species (Miscanthus sinensis and Miscanthus floridulus) of Taiwan and further explored the roles of host plant on root-associated microbiomes.
resultsOur results suggest that host plant genetic variation, edaphic factors, and site had effects on the root endophytic and rhizosphere soil microbial community compositions in both Miscanthus sinensis and Miscanthus floridulus, with a greater effect of plant genetic variation observed for the root endophytic communities. Host plant genetic variation also exerted a stronger effect on core prokaryotic communities than on non-core prokaryotic communities in each microhabitat of two Miscanthus species. From rhizosphere soils to root endophytes, prokaryotic co-occurrence network stability increased, but fungal co-occurrence network stability decreased. Furthermore, we found root endophytic microbial communities in two Miscanthus species were more strongly driven by deterministic processes rather than stochastic processes. Root-enriched prokaryotic OTUs belong to Gammaproteobacteria, Alphaproteobacteria, Betaproteobacteria, Sphingobacteriia, and [Saprospirae] both in two Miscanthus species, while prokaryotic taxa enriched in the rhizosphere soil are widely distributed among different phyla.
conclusionsWe provide empirical evidence that host genetic variation plays important roles in root-associated microbiome in Miscanthus. The results of this study have implications for future bioenergy crop management by providing baseline data to inform translational research to harness the plant microbiome to sustainably increase agriculture productivity. Video Abstract.
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