Evidence map›Paper›PMID 37776423›Full record

ArticleCellular oncology (Dordrecht, Netherlands)2024

Identifying the effectiveness of 3D culture systems to recapitulate breast tumor tissue in situ.

Katarzyna A Ludwik, Frances R Greathouse, Samuel Han, Kimberly Stauffer, David R Brenin, Thomas P Stricker, Deborah A Lannigan

Abstract read
In one paragraph

Article in Cellular oncology (Dordrecht, Netherlands), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Katarzyna A LudwikDepartment Pathology, Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Frances R GreathouseDepartment Pathology, Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Samuel HanPeerNova, San Jose, CA, 95110, USA.
Kimberly StaufferDepartment Pathology, Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
David R BreninDepartment Surgery, University of Virginia, Charlottesville, VA, 22908, USA.
Thomas P StrickerDepartment Pathology, Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Deborah A LanniganDepartment Pathology, Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA. deborah.lannigan@vumc.org.

Funding

RSK2 in Estrogen Receptor Positive (ER+) Breast CancerR01CA213201 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LANNIGAN, DEBORAH, SULIKOWSKI, GARY ALLEN · 2018 to 2022
$1.8M
Estrogen Receptor HomeostasisR01DK113423 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LANNIGAN, DEBORAH · 2018 to 2022
$1.6M
NCI NIH HHS R01 CA213201NIDDK NIH HHS R01 DK113423Susan G. Komen IIR12223770
6 · The paper itself

Abstract

purposeBreast cancer heterogeneity contributes to chemotherapy resistance and decreased patient survival. To improve patient outcomes it is essential to develop a technology that is able to rapidly select the most efficacious therapy that targets the diverse phenotypes present within the tumor. Breast cancer organoid technologies are proposed as an attractive approach for evaluating drug responses prior to patient therapy. However, there remain challenges in evaluating the effectiveness of organoid cultures to recapitulate the heterogeneity present in the patient tumor in situ.

methodOrganoids were generated from seven normal breast and nineteen breast cancer tissues diagnosed as estrogen receptor positive or triple negative. The Jensen-Shannon divergence index, a measure of the similarity between distributions, was used to compare and evaluate heterogeneity in starting tissue and their resultant organoids. Heterogeneity was analyzed using cytokeratin 8 and cytokeratin 14, which provided an easily scored readout.

resultsIn the in vitro culture system HER1 and FGFR were able to drive intra-tumor heterogeneity to generate divergent phenotypes that have different sensitivities to chemotherapies.

conclusionOur methodology, which focuses on quantifiable cellular phenotypes, provides a tractable system that complements omics approaches to provide an unprecedented view of heterogeneity and will enhance the identification of novel therapies and facilitate personalized medicine.

Indexed as

Breast NeoplasmsOrganoidsCell Culture Techniques, Three DimensionalFemaleHumansPhenotypeBreast cancerChemotherapyEstrogen receptor alphaHER1HeterogeneityMicroenvironmentOrganoid

Identifiers

PMID37776423
PMCPMC11090829

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.