Evidence map›Paper›PMID 37774676›Full record

ArticleCell2023

Tracking cell-type-specific temporal dynamics in human and mouse brains.

Ziyu Lu, Melissa Zhang, Jasper Lee, Andras Sziraki, Sonya Anderson, Zehao Zhang, Zihan Xu, Weirong Jiang, Shaoyu Ge, Peter T Nelson and 2 more

Abstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ziyu LuLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA; The David Rockefeller Graduate Program in Bioscience, The Rockefeller University, New York, NY, USA.
Melissa ZhangLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA.
Jasper LeeLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA.
Andras SzirakiLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA; The David Rockefeller Graduate Program in Bioscience, The Rockefeller University, New York, NY, USA.
Sonya AndersonDepartment of Pathology and Sanders-Brown Center on Aging, University of Kentucky, Lexington, KY, USA.
Zehao ZhangLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA; The David Rockefeller Graduate Program in Bioscience, The Rockefeller University, New York, NY, USA.
Zihan XuLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA; The David Rockefeller Graduate Program in Bioscience, The Rockefeller University, New York, NY, USA.
Weirong JiangLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA.
Shaoyu GeDepartment of Neurobiology & Behavior, SUNY at Stony Brook, Stony Brook, NY, USA.
Peter T NelsonDepartment of Pathology and Sanders-Brown Center on Aging, University of Kentucky, Lexington, KY, USA.
Wei ZhouLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA. Electronic address: wzhou@rockefeller.edu.
Junyue CaoLaboratory of Single Cell Genomics and Population Dynamics, The Rockefeller University, New York, NY, USA. Electronic address: jcao@rockefeller.edu.

Funding

Strategies for Targeting Astrocyte Reactivity in Alzheimer's Disease and Related DementiasP01AG078116 · NIA · UNIVERSITY OF KENTUCKY · PI Christopher Mark Norris · 2022 to 2026
$25.0M
University of Kentucky Alzheimer's Disease Research CenterP30AG072946 · NIA · UNIVERSITY OF KENTUCKY · PI LINDA J VAN ELDIK · 2021 to 2026
$23.5M
Center for Integrated Cellular Analysis - Valeria A. Sanchez EstradaRM1HG011014 · NHGRI · NEW YORK GENOME CENTER · PI LANDAU, DAN, SATIJA, RAHUL · 2020 to 2025
$22.1M
Development of novel genomic approaches for profiling cellular temporal-spatial dynamics of neurogenesis in Aging and Alzheimer's diseaseR01AG076932 · NIA · ROCKEFELLER UNIVERSITY · PI Junyue Cao · 2022 to 2026
$4.0M
Single cell dynamics on a whole organism scaleDP2HG012522 · NHGRI · ROCKEFELLER UNIVERSITY · PI CAO, JUNYUE · 2021 to 2024
$2.5M
Mechanistic study of declining hippocampal neurogenesis in the aging brainR01AG066912 · NIA · STATE UNIVERSITY NEW YORK STONY BROOK · PI GE, SHAOYU, XIONG, QIAOJIE · 2020 to 2024
$2.0M
NHGRI NIH HHS DP2 HG012522NHGRI NIH HHS RM1 HG011014NIA NIH HHS P01 AG078116NIA NIH HHS P30 AG072946NIA NIH HHS R01 AG066912NIA NIH HHS R01 AG076932
6 · The paper itself

Abstract

Progenitor cells are critical in preserving organismal homeostasis, yet their diversity and dynamics in the aged brain remain underexplored. We introduced TrackerSci, a single-cell genomic method that combines newborn cell labeling and combinatorial indexing to characterize the transcriptome and chromatin landscape of proliferating progenitor cells in vivo. Using TrackerSci, we investigated the dynamics of newborn cells in mouse brains across various ages and in a mouse model of Alzheimer's disease. Our dataset revealed diverse progenitor cell types in the brain and their epigenetic signatures. We further quantified aging-associated shifts in cell-type-specific proliferation and differentiation and deciphered the associated molecular programs. Extending our study to the progenitor cells in the aged human brain, we identified conserved genetic signatures across species and pinpointed region-specific cellular dynamics, such as the reduced oligodendrogenesis in the cerebellum. We anticipate that TrackerSci will be broadly applicable to unveil cell-type-specific temporal dynamics in diverse systems.

Indexed as

BrainStem CellsAgingAnimalsCell DifferentiationChromatinEpigenomicsHumansMiceTranscriptomeChromatinagingcell-type-specificneurogenesisoligodendrogenesissingle-cell epigenomesingle-cell transcriptometemporal dynamics

Identifiers

PMID37774676
PMCPMC10545416

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.