Evidence map›Paper›PMID 37773707›Full record

ArticleImmunity, inflammation and disease2023

ScRNA-seq revealed disruption in CD8

Yuan Fang, CongWen Bian, ZhiTao Li, Li Jin, ChuHong Chen, YingLei Miao, HanFei Huang, Zhong Zeng

Open access · goldAbstract read
In one paragraph

Article in Immunity, inflammation and disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. ScRNA-seq revealed disruption in CD8Immunity, inflammation and disease · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yuan FangOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
CongWen BianOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
ZhiTao LiOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
Li JinOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
ChuHong ChenOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
YingLei MiaoYunnan Province Clinical Research Center for Digestive Diseases, Yunnan, PR China.
HanFei HuangOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.ORCID http://orcid.org/0000-0002-0852-9596
Zhong ZengOrgan Transplantation Center, the First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan, PR China.
Kunming Medical University · CNYunnan Institute of Parasitic Diseases · CN

Funding

National Natural Science Foundation of China 81960123 and 81960124
6 · The paper itself

Abstract

backgroundLiver transplantation (LT) offers a good survival chance for both the patient in short or long term, but still faces many challenges in the treatment of LT, such as the side effects associated with long-term immunosuppression, which is one of the side effects that occurs in most patients. However, the dynamics of the cellular immune system composition over time during immune tolerance to LT after immunosuppressive therapy are not known.

methodsUsing single-cell transcriptome sequencing, we analyzed five peripheral blood samples (one normal individual and four patients who underwent LT and received immunosuppressive therapy for 2 months, 1 year, 3 years, and 7 years, respectively) for immune cell composition and gene expression.

resultsA total of 17,462 peripheral blood mononuclear cells were acquired from a normal individual without LT and patients who underwent LT and received immunosuppressive therapy for 2 months, 1 year, 3 years, and 7 years, respectively. A total of 24 cell clusters were obtained and categorized into four different cell types based on gene expression characteristics as follows: eight clusters of T cells, two clusters of B cells, two clusters of neutrophils, two clusters of monocytes, natural killer cells, and natural killer T (NKT) cells (n = 4), and six other cell clusters. Cell subset analysis, pseudotime analysis, and intercellular communication analysis revealed that the CD8

conclusionsWe comprehensively analyzed single-cell RNA sequencing data from a normal individual and patients who underwent LT and elucidated the mechanism underlying the development of immune tolerance in LT. CD8

Indexed as

CD8-Positive T-LymphocytesImmunosuppression TherapyImmunosuppressive AgentsLiver TransplantationNatural Killer T-CellsNK Cell Lectin-Like Receptor Subfamily CAdultFemaleHumansMaleMiddle AgedRNA-SeqSingle-Cell AnalysisSingle-Cell Gene Expression AnalysisTranscriptomeImmunosuppressive AgentsKLRC1 protein, humanNK Cell Lectin-Like Receptor Subfamily Cimmune toleranceimmunosuppressive therapyKLRC1liver transplantationsingle-cell RNA-sequencing

Identifiers

PMID37773707
PMCPMC10524014
OpenAlexW4387107711

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.